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2022-11-24gnu: r-organism-dplyr: Update to 1.26.0....* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.26.0. zimoun
2022-11-24gnu: r-mzr: Update to 2.32.0....* gnu/packages/bioconductor.scm (r-mzr): Update to 2.32.0. zimoun
2022-11-24gnu: r-mzid: Update to 1.36.0....* gnu/packages/bioconductor.scm (r-mzid): Update to 1.36.0. zimoun
2022-11-24gnu: r-msnid: Update to 1.32.0....* gnu/packages/bioconductor.scm (r-msnid): Update to 1.32.0. zimoun
2022-11-24gnu: r-msnbase: Update to 2.24.0....* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.24.0. zimoun
2022-11-24gnu: r-mutationalpatterns: Update to 3.8.0....* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.8.0. zimoun
2022-11-24gnu: r-muscat: Update to 1.12.0....* gnu/packages/bioconductor.scm (r-muscat): Update to 1.12.0. zimoun
2022-11-24gnu: r-methylkit: Update to 1.24.0....* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.24.0. zimoun
2022-11-24gnu: r-made4: Update to 1.72.0....* gnu/packages/bioconductor.scm (r-made4): Update to 1.72.0. zimoun
2022-11-24gnu: r-limma: Update to 3.54.0....* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.0. zimoun
2022-11-24gnu: r-lfa: Update to 1.28.0....* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.0. zimoun
2022-11-24gnu: r-keggrest: Update to 1.38.0....* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.38.0. zimoun
2022-11-24gnu: r-interactivedisplaybase: Update to 1.36.0....* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.36.0. zimoun
2022-11-24gnu: r-impute: Update to 1.72.1....* gnu/packages/bioconductor.scm (r-impute): Update to 1.72.1. zimoun
2022-11-24gnu: r-rhtslib: Update to 2.0.0....* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.0.0. zimoun
2022-11-24gnu: r-hpar: Update to 1.40.0....* gnu/packages/bioconductor.scm (r-hpar): Update to 1.40.0. zimoun
2022-11-24gnu: r-gseabase: Update to 1.60.0....* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.60.0. zimoun
2022-11-24gnu: r-gostats: Update to 2.64.0....* gnu/packages/bioconductor.scm (r-gostats): Update to 2.64.0. zimoun
2022-11-24gnu: r-genomicranges: Update to 1.50.1....* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.50.1. zimoun
2022-11-24gnu: r-genomicfiles: Update to 1.34.0....* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.34.0. zimoun
2022-11-24gnu: r-genomicfeatures: Update to 1.50.2....* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.50.2. zimoun
2022-11-24gnu: r-genomicalignments: Update to 1.34.0....* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.34.0. zimoun
2022-11-24gnu: r-genomeinfodb: Update to 1.34.3....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.3. zimoun
2022-11-24gnu: r-genomation: Update to 1.30.0....* gnu/packages/bioconductor.scm (r-genomation): Update to 1.30.0. zimoun
2022-11-24gnu: r-geneoverlap: Update to 1.34.0....* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.34.0. zimoun
2022-11-24gnu: r-genefilter: Update to 1.80.0....* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.80.0. zimoun
2022-11-24gnu: r-gage: Update to 2.48.0....* gnu/packages/bioconductor.scm (r-gage): Update to 2.48.0. zimoun
2022-11-24gnu: r-fastseg: Update to 1.44.0....* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.44.0. zimoun
2022-11-24gnu: r-ensembldb: Update to 2.22.0....* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.22.0. zimoun
2022-11-24gnu: r-edger: Update to 3.40.0....* gnu/packages/bioconductor.scm (r-edger): Update to 3.40.0. zimoun
2022-11-24gnu: r-edaseq: Update to 2.32.0....* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.32.0. zimoun
2022-11-24gnu: r-dittoseq: Update to 1.10.0....* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.10.0. zimoun
2022-11-24gnu: r-dirichletmultinomial: Update to 1.40.0....* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.40.0. zimoun
2022-11-24gnu: r-diffcyt: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.18.0. zimoun
2022-11-24gnu: r-dexseq: Update to 1.44.0....* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.44.0. zimoun
2022-11-24gnu: r-deseq2: Update to 1.38.1....* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.38.1. zimoun
2022-11-24gnu: r-copywriter: Update to 2.29.0....* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.29.0. zimoun
2022-11-24gnu: r-complexheatmap: Update to 2.14.0....* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.14.0. zimoun
2022-11-24gnu: r-chipseq: Update to 1.48.0....* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.48.0. zimoun
2022-11-24gnu: r-chipseeker: Update to 1.34.0....* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.34.0. zimoun
2022-11-24gnu: r-category: Update to 2.64.0....* gnu/packages/bioconductor.scm (r-category): Update to 2.64.0. zimoun
2022-11-24gnu: r-bsgenome: Update to 1.66.1....* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.1. zimoun
2022-11-24gnu: r-biovizbase: Update to 1.46.0....* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.46.0. zimoun
2022-11-24gnu: r-biostrings: Update to 2.66.0....* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.66.0. zimoun
2022-11-24gnu: r-biocparallel: Update to 1.32.1....* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.1. [arguments]<phases>: Update 'make-reproducible' to released files. [propagated-inputs]: Add r-cpp11. zimoun
2022-11-24gnu: r-biomart: Update to 2.54.0....* gnu/packages/bioconductor.scm (r-biomart): Update to 2.54.0. zimoun
2022-11-24gnu: r-biobase: Update to 2.58.0....* gnu/packages/bioconductor.scm (r-biobase): Update to 2.58.0. zimoun
2022-11-24gnu: r-bamsignals: Update to 1.30.0....* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.30.0. zimoun
2022-11-24gnu: r-aroma-light: Update to 3.28.0....* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.28.0. zimoun
2022-11-24gnu: r-annotationhub: Update to 3.6.0....* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.6.0. zimoun
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href='/guix/commit/m4?id=968ae903189c6c4a41c0e2cddf41ffc5a8c32f93'>build: Reject ARMv6 systems....Fixes <http://bugs.gnu.org/21987>. Reported by Martin Vahi <martin.vahi@softf1.com>. * m4/guix.m4 (GUIX_SYSTEM_TYPE): Restrict ARM systems to arm|armv[7-9]. Ludovic Courtès 2015-10-09build: Fix libgcrypt detection on FHS systems....Reported by Christopher Allan Webber <cwebber@dustycloud.org>. * m4/guix.m4 (GUIX_LIBGCRYPT_LIBDIR): Add "grep -e -L" to the pipeline to account for cases where the output of "libgcrypt-config --libs" lacks a -L flag. * configure.ac: When 'GUIX_LIBGCRYPT_LIBDIR' returns the empty string, set LIBGCRYPT_LIBDIR to "no". * config-daemon.ac: Add missing space. Ludovic Courtès 2015-10-06build: Automatically determine libgcrypt's file name....* m4/guix.m4 (GUIX_LIBGCRYPT_LIBDIR): New macro. * configure.ac: Use it when no --with-libgcrypt-* option was passed. * README: Do not recommend --with-libgcrypt-prefix. Co-authored-by: 宋文武 <iyzsong@gmail.com> Ludovic Courtès 2015-08-27build: Do not build (guix build syscalls) if 'mount' is missing from libc....This disables compilation of this module on GNU/Hurd. Reported by Manolis Ragkousis <manolis837@gmail.com>. * m4/guix.m4 (GUIX_CHECK_LIBC_MOUNT): New variable. * configure.ac: Use it. Define 'BUILD_SYSCALLS_MODULE' conditional. * Makefile.am (MODULES, EXTRA_DIST): Make 'guix/build/syscalls.scm' conditional on BUILD_SYSCALLS_MODULE. Ludovic Courtès 2015-05-19build: Make sure $CXX supports C++11....* m4/guix.m4 (GUIX_CHECK_CXX11, GUIX_ASSERT_CXX11): New macros. * config-daemon.ac: Use 'AC_LANG([C++])' and 'GUIX_ASSERT_CXX11'.C * doc/guix.texi (Requirements): Mention C++11 support. Ludovic Courtès 2015-02-24build: Reject or warn against file name length limit overruns....* m4/guix.m4 (GUIX_TEST_ROOT_DIRECTORY, LINUX_HASH_BANG_LIMIT, SOCKET_FILE_NAME_LIMIT, GUIX_SOCKET_FILE_NAME_LENGTH, GUIX_TEST_SOCKET_FILE_NAME_LENGTH, GUIX_HASH_BANG_LENGTH, GUIX_CHECK_FILE_NAME_LIMITS): New macros. * configure.ac: Use 'GUIX_CHECK_FILE_NAME_LIMITS'. * config-daemon.ac: Use 'GUIX_TEST_ROOT_DIRECTORY'. * test-env.in: Check socket name length and emit warning if it exceeds 107. Ludovic Courtès 2015-01-07gnu: Add bootstrap binaries for 'armhf-linux'....* gnu/packages/bootstrap/armhf-linux/bash, gnu/packages/bootstrap/armhf-linux/mkdir, gnu/packages/bootstrap/armhf-linux/tar, gnu/packages/bootstrap/armhf-linux/xz: New files. * gnu-system.am (bootstrap_armhf_linuxdir, dist_bootstrap_armhf_linux_DATA) (nodist_bootstrap_armhf_linux_DATA): New variables. (DISTCLEANFILES): Add $(nodist_bootstrap_armhf_linux_DATA). (gnu/packages/bootstrap/armhf-linux/guile-2.0.11.tar.xz): New target. * build-aux/download.scm (file-name->uri): Use newer date in URI for armhf-linux. * gnu/packages/bootstrap.scm (raw-build): Use "guile-2.0.11.tar.xz" on armhf-linux. (glibc-dynamic-linker, %bootstrap-coreutils&co, %bootstrap-binutils) (%bootstrap-glibc, %bootstrap-gcc): Add armhf-linux cases. * m4/guix.m4 (GUIX_SYSTEM_TYPE): Add armhf case. (GUIX_ASSERT_SUPPORTED_SYSTEM): Add armhf-linux to list of supported systems. * doc/guix.texi (GNU Distribution): Add armhf-linux to the list of supported systems. Mark H Weaver