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2019-04-06gnu: r-mlinterfaces: Update to 1.62.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.62.1.
2019-04-06gnu: r-inspect: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.2.
2019-04-06gnu: r-ldblock: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.12.1.
2019-04-06gnu: r-ensembldb: Update to 2.6.8.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.8.
2019-04-06gnu: r-rjava: Update to 0.9-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-rjava): Update to 0.9-11.
2019-04-06gnu: r-optparse: Update to 1.6.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-optparse): Update to 1.6.2.
2019-04-06gnu: r-spdep: Update to 1.1-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-spdep): Update to 1.1-2.
2019-04-06gnu: r-bedr: Update to 1.0.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-bedr): Update to 1.0.7.
2019-04-06gnu: r-rspectra: Update to 0.14-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rspectra): Update to 0.14-0.
2019-04-06gnu: r-flextable: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.5.2. [propagated-inputs]: Add r-base64enc; remove r-magick.
2019-04-06gnu: r-insight: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.2.0.
2019-04-06gnu: r-network: Update to 1.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-network): Update to 1.15.
2019-04-06gnu: r-xfun: Update to 0.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.6.
2019-04-06gnu: r-extremes: Update to 2.0-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-extremes): Update to 2.0-10. [propagated-inputs]: Remove r-car.
2019-04-06gnu: r-distillery: Update to 1.0-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-distillery): Update to 1.0-6.
2019-04-06gnu: r-circlize: Update to 0.4.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): Update to 0.4.6.
2019-04-06gnu: r-httpuv: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.1.
2019-04-06gnu: r-gdtools: Update to 0.1.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.8. [native-inputs]: Move r-rcpp from here... [propagated-inputs]: ...to here.
2019-04-06gnu: r-rlang: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.3.
2019-04-06gnu: r-survival: Update to 2.44-1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-survival): Update to 2.44-1.1.
2019-04-06gnu: r-mass: Update to 7.3-51.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.3.
2019-04-06gnu: r-cluster: Update to 2.0.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.8.
2019-04-06gnu: python-certifi: Update to 2019.3.9.Efraim Flashner
* gnu/packages/python-crypto.scm (python-certifi): Update to 2019.3.9.
2019-04-05services: wpa-supplicant: Log to syslog.Ludovic Courtès
* gnu/services/networking.scm (wpa-supplicant-shepherd-service): Pass "-s" to 'wpa_supplicant'. Add 'syslogd' to 'requirement'.
2019-04-05services: localed: Do nothing for unconfigured keyboards.Ludovic Courtès
* gnu/services/xorg.scm (localed-service-type)[package]: Return the empty list when the 'keyboard-layout' field is #f. [compose]: Use 'find' instead of 'first'.
2019-04-05services: localed: Properly handle lack of a 'keyboard-layout'.Ludovic Courtès
Fixes a type error when KEYBOARD-LAYOUT is #f. * gnu/services/xorg.scm (localed-dbus-service): Return the empty list when KEYBOARD-LAYOUT is #f.
2019-04-05services: gdm: Properly handle empty extensions lists.Ludovic Courtès
Fixes a bug whereby not extending GDM would lead us to do: (first '()) in the 'compose' method. Regression introduced in 305a732a0a19c5810aab401aa7d70eba02ac386b. * gnu/services/xorg.scm (gdm-service-type)[compose]: Handle the case where EXTENSIONS is empty. [extend]: Handle the case where XORG-CONFIGURATION is #f.
2019-04-05gnu: emacs-undohist-el: Apply 'emacs-undohist-ignored.patch'.Oleg Pykhalov
This commit follows 3dbd240937a7fb4322db21bc1bf6189a1a512223. * gnu/packages/emacs-xyz.scm (emacs-undohist-el)[source]: Add 'emacs-undohist-ignored.patch'.
2019-04-05gnu: Add emacs-undohist-el.Brian Leung
* gnu/packages/patches/emacs-undohist-ignored.patch: New file. * gnu/local.mk (dist_patch_DATA): Add this. * gnu/packages/emacs-xyz.scm (emacs-undohist-el): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-04-05services: console-keymap: Deprecate.Ludovic Courtès
* gnu/services/base.scm (console-keymap-service): Mark as deprecated. * doc/guix.texi (Base Services): Remove its documentation.
2019-04-05doc: Explain how to change the keyboard layout at run time.Ludovic Courtès
* doc/guix.texi (Keyboard Layout): Mention GNOME's "Region & Language", setxkbmap, and loadkeys.
2019-04-05services: xorg: Add 'set-xorg-configuration'.Ludovic Courtès
* gnu/services/xorg.scm (gdm-service-type)[compose, extend]: New fields. (set-xorg-configuration): New procedure. * doc/guix.texi (Keyboard Layout): Use it. (X Window): Document it. * gnu/system/examples/desktop.tmpl: Add 'keyboard-layout' fields.
2019-04-05services: Add 'localed' service type and have GDM extend it.Ludovic Courtès
This fixes a bug whereby GDM would always switch to US English keyboard layout regardless to the configured Xorg keyboard layout. * gnu/services/xorg.scm (<localed-configuration>): New record type. (localed-dbus-service): New procedure. (localed-service-type): New variable. (gdm-service-type): Extend LOCALED-SERVICE-TYPE.
2019-04-05services: dbus: 'wrapped-dbus-service' accepts a list of variables.Ludovic Courtès
* gnu/services/dbus.scm (wrapped-dbus-service): Replace 'variable' and 'value' by 'variables', and adjust code accordingly. * gnu/services/desktop.scm (upower-dbus-service): (geoclue-dbus-service, elogind-dbus-service): Adjust accordingly.
2019-04-05gnu: Add localed, extracted from systemd.Ludovic Courtès
* gnu/packages/freedesktop.scm (localed): New variable. * gnu/packages/patches/localed-xorg-keyboard.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-04-05services: dbus: Add 'wrapped-dbus-service'.Ludovic Courtès
* gnu/services/desktop.scm (wrapped-dbus-service): Move to... * gnu/services/dbus.scm (wrapped-dbus-service): ... here. New procedure.
2019-04-05gnu: emacs-cider: Update to 0.21.0.Jelle Licht
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 0.21.0.
2019-04-05gnu: subversion: Update to 1.10.4 (fixes CVE-2018-11803).Efraim Flashner
* gnu/packages/version-control.scm (subversion): Update to 1.10.4.
2019-04-05gnu: flac: Fix CVE-2017-6888.Efraim Flashner
* gnu/packages/xiph.scm (flac)[replacement]: New field. (flac/fixed): New variable. * gnu/packages/patches/flac-CVE-2017-6888.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-04-05gnu: linux-libre: Update to 5.0.6.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.6. (%linux-libre-hash): Update hash.
2019-04-05gnu: linux-libre@4.19: Update to 4.19.33.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.33. (%linux-libre-4.19-hash): Update hash.
2019-04-05gnu: linux-libre@4.14: Update to 4.14.110.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.110. (%linux-libre-4.14-hash): Update hash.
2019-04-05gnu: linux-libre@4.9: Update to 4.9.167.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.167.
2019-04-05gnu: linux-libre@4.4: Update to 4.4.178.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.178.
2019-04-05gnu: flashrom: Update to 1.0.1.Tobias Geerinckx-Rice
* gnu/packages/flashing-tools.scm (flashrom): Update to 1.0.1. [arguments]: Remove CFLAGS work-around.
2019-04-05gnu: entr: Update to 4.2.Tobias Geerinckx-Rice
* gnu/packages/entr.scm (entr): Update to 4.2.
2019-04-05gnu: ledger: Update to 3.1.3.Tobias Geerinckx-Rice
The patch applies but has been unnecessary since 3.1.2. * gnu/packages/finance.scm (ledger): Update to 3.1.3. [source]: Remove obsolete patch. * gnu/packages/patches/ledger-fix-uninitialized.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-04-04gnu: emacs-matrix-client: Add missing require.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-matrix-client): Add a missing require to prevent a runtime error.
2019-04-04gnu: php: Update to 7.3.4.Julien Lepiller
* gnu/packages/php.scm (php): Update to 7.3.4.
2019-04-04gnu: certbot, python-acme: Update to 0.33.0.Leo Famulari
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.33.0.
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