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2017-07-04gnu: blast+: Update to 2.6.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. [origin]: Remove bundled pcre. [arguments]: Replace paths in run_with_lock.c. Configure with pcre. [inputs]: Add pcre, perl, python.
2017-07-04gnu: linux-libre: Update to 4.12.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12. (%linux-libre-hash): Update hash. * gnu/packages/aux-files/linux-libre/4.11-i686.conf, gnu/packages/aux-files/linux-libre/4.11-x86_64.conf: Delete files. * gnu/packages/aux-files/linux-libre/4.12-i686.conf, gnu/packages/aux-files/linux-libre/4.12-x86_64.conf: New files. * Makefile.am (AUX_FILES): Update accordingly.
2017-07-04gnu: qt: Update to 5.9.1.Efraim Flashner
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras) (qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors) (qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel) (qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2) (qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcanvas3d) (qtcharts, qtdatavis3d, qtwebkit): Update to 5.9.1. (qtwebkit)[source]: Change to official qt location.
2017-07-04gnu: python-pylint: Update to 1.7.2.Marius Bakke
* gnu/packages/python.scm (python-pylint): Update to 1.7.2. [native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
2017-07-04gnu: python-astroid: Update to 1.5.3.Marius Bakke
* gnu/packages/python.scm (python-astroid): Update to 1.5.3. [properties]: Declare python2 variant. (python2-astroid)[propagated-inputs]: Add PYTHON2-BACKPORTS-FUNCTOOLS-LRU-CACHE, PYTHON2-ENUM34 and PYTHON2-SINGLEDISPATCH.
2017-07-04gnu: python-pyopenssl: Update to 17.1.0.Marius Bakke
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.1.0. [source]: Remove patch. [native-inputs]: Add PYTHON-PRETEND. [arguments]<#:phases>: Disable the network test here instead of via a patch. Also disable one new test. * gnu/packages/patches/python-pyopenssl-skip-network-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-04gnu: python-cryptography: Update to 1.9.Marius Bakke
* gnu/packages/python.scm (python-cryptography-vectors): Update to 1.9. (python-cryptography): Update to 1.9. [propagated-inputs]: Remove PYTHON-PACKAGING.
2017-07-04gnu: python-cffi: Update to 1.10.0.Marius Bakke
* gnu/packages/python.scm (python-cffi): Update to 1.10.0. [arguments]<#:phases>: Patch distutils.ccompiler call to use "gcc". Patch another hard-coded cc invocation. Adjust `py.test` invocation per README.
2017-07-04gnu: python-cffi: Really enable tests.Marius Bakke
* gnu/packages/python.scm (python-cffi, python2-cffi)[arguments]: Replace 'check' phase with custom expression. Change to 'modify-phases' syntax.
2017-07-04gnu: re2: Update to 2017-07-01.Marius Bakke
* gnu/packages/regex.scm (re2): Update to 2017-07-01.
2017-07-04install: Drop redundant package after c0f5eee4b2cc737be222c4ba331d0.Marius Bakke
* gnu/system/install.scm (installation-os): Remove SHADOW.
2017-07-04gnu: ibus: Update to 1.5.16.Tobias Geerinckx-Rice
* gnu/packages/ibus.scm (ibus): Update to 1.5.16.
2017-07-04gnu: cdogs-sdl: Update to 0.6.5.Tobias Geerinckx-Rice
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.5. [inputs]: Add mesa. [home-page]: Use HTTPS.
2017-07-04gnu: nnn: Update to 1.2.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (nnn): Update to 1.2.
2017-07-03gnu: gcr: Correct patch.Kei Kebreau
* gnu/packages/patches/gcr-disable-failing-tests.patch: Correct erroneously committed file. This is a follow-up to commit 85c774808fc13a0adc603784b2358a7c285c4822.
2017-07-03discovery: Recurse into directories pointed to by a symlink.Ludovic Courtès
Reported by Christopher Baines <mail@cbaines.net> and Alex Kost <alezost@gmail.com> at <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00290.html>. * guix/discovery.scm (scheme-files): When ENTRY is a symlink that doesn't end in '.scm', call 'stat' and recurse if it points to a directory. * tests/discovery.scm ("scheme-modules recurses in symlinks to directories"): New test.
2017-07-03copy: Default to port 22.Ludovic Courtès
Failing to do that, "%p" would be "0" when using "ProxyCommand" in ~/.ssh/config. * guix/scripts/copy.scm (send-to-remote-host): Default to port 22. (retrieve-from-remote-host): Likewise.
2017-07-03packages: Mark 'replacement' as an "innate" field.Ludovic Courtès
Suggested by Mark H Weaver at <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00355.html>. * guix/packages.scm (<package>)[replacement]: Mark as "innate". * gnu/packages/base.scm (glibc-2.25-patched, glibc-2.24) (glibc-2.23, glibc-2.22, glibc-2.21, glibc-locales): Remove 'replacement' field, which was set to #f. * gnu/packages/commencement.scm (perl-boot0): Likewise. * gnu/packages/fontutils.scm (graphite2/fixed): Likewise. * gnu/packages/ghostscript.scm (ghostscript/fixed): Likewise. * gnu/packages/gnupg.scm (libgcrypt-1.7.8): Likewise. * gnu/packages/guile.scm (guile-2.0/fixed, guile-2.2): Likewise. * gnu/packages/icu4c.scm (icu4c/fixed): Likewise. * gnu/packages/image.scm (libpng-apng): Likewise. * gnu/packages/make-bootstrap.scm (%guile-static): Likewise. * gnu/packages/pcre.scm (pcre/fixed): Likewise. * gnu/packages/perl.scm (perl/fixed): Likewise. * gnu/packages/ruby.scm (ruby-2.3, ruby-2.2, ruby-2.1) (ruby-1.8): Likewise. * gnu/packages/tls.scm (gnutls-3.5.13, gnutls/guile-2.2): Likewise. * gnu/packages/xml.scm (expat-2.2.1): Likewise.
2017-07-03gnu: wine: Add stable release.Nicolas Goaziou
* gnu/packages/wine.scm (wine): Refer to stable release instead of development one. (wine-next): New variable.
2017-07-03profiles: xdg-desktop-database: Run the hook when GLib is referenced.宋文武
This will pull the latest 'desktop-file-utils' package into the profile closure, as the 'xdg-mime-database' hook already does. * guix/profiles.scm (xdg-desktop-database): Run the hook when 'glib' is referenced.
2017-07-03doc: Update formatting.Danny Milosavljevic
* doc/guix.texi (disk-image): Update formatting of "ext4". Follow-up to 3f4d8a7f66060e93a247797a9bbd2fcbee6922a3.
2017-07-03gnu: Add emacs-emamux.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-emamux): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-07-03build: Add (gnu build file-systems) import.Danny Milosavljevic
* gnu/build/vm.scm: Add (gnu build file-systems) import.
2017-07-03guix system: Add "--file-system-type" option.Danny Milosavljevic
* guix/scripts/system.scm (process-action): Pass file-system-type to ... (perform-action): ... here. Add new keyword argument. Pass new value to ... (system-derivation-for-action): ... here. Add new keyword argument. Pass new value to system-disk-image. * doc/guix.texi (disk-image): Document new option.
2017-07-03gnu: gcr: Enable working tests.Kei Kebreau
* gnu/packages/patches/gcr-disable-failing-tests.patch, gnu/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch: New files. * gnu/local.mk (dist_patch_DATA): Add patches. * gnu/packages/gnome.scm (gcr)[source]: Use patches. [arguments]: Enable tests.
2017-07-03build: Clarify error message when make-iso9660-image fails.Danny Milosavljevic
* gnu/build/vm.scm (make-iso9660-image): Clarify error message.
2017-07-03build: Allow specifying volume-uuid with make-iso9660-image.Danny Milosavljevic
* gnu/build/file-systems.scm (iso9660-uuid->string): Export. * gnu/build/vm.scm (make-iso9660-image): Add volume-uuid.
2017-07-03gnu: xfce: Propagate search paths of 'xfce4-panel'.宋文武
* gnu/packages/xfce.scm (xfce)[native-search-paths]: New field.
2017-07-03gnu: Add emacs-sparql-mode.Roel Janssen
* gnu/packages/emacs.scm (emacs-sparql-mode): New variable.
2017-07-03build: Add iso9660 system image generator.Danny Milosavljevic
* build-aux/hydra/gnu-system.scm (qemu-jobs): Add 'iso9660-image . * gnu/build/vm.scm (make-iso9660-image): New variable. Export it. * gnu/system/vm.scm (iso9660-image): New variable. Use make-iso9660-image. (system-disk-image): Use iso9660-image.
2017-07-02gnu: Switch guile-cairo and dependents to Guile 2.2 again.Ludovic Courtès
Fixes <https://bugs.gnu.org/27551>. Reported by Leo Famulari <leo@famulari.name>. This reinstates the following commits: e3ddb1e83 * gnu: guile-cairo: Switch to Guile 2.2. ae5c6ef39 * gnu: guile-gnome: Update to 2.16.5. 0fd8013fc * gnu: guile-rsvg: Update to commit 05c6a2fd. 66b9183c4 * gnu: guile-lib: Switch to Guile 2.2. and adds the following changes: * gnu/bootloader/grub.scm (svg->png): Add 'package->derivation' call for GUILE-2.2. Pass #:guile-for-build to 'gexp->derivation'. * gnu/build/svg.scm (svg->png): Add 'em' and 'ex' to the 'let-values' form to account for all the values returned by 'rsvg-handle-get-dimensions', which Guile 2.2 does not truncate.
2017-07-02gnu: Add toxic.Theodoros Foradis
* gnu/packages/messaging.scm (toxic): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-02linux-initrd: Add isofs if necessary.Danny Milosavljevic
* gnu/system/linux-initrd.scm (base-initrd): Add isofs.
2017-07-02gnu: emacs-guix: Update to 0.3.2.Alex Kost
* gnu/packages/emacs.scm (emacs-guix): Update to 0.3.2. [arguments]: Add '--with-guix-site-ccache-dir' configure flag, as Guix installs its .go files separately nowadays.
2017-07-02file-systems: iso9660-uuid->string: Use "-" as separator in the result.Danny Milosavljevic
* gnu/build/file-systems.scm (iso9660-uuid->string): Use "-" as separator in the result.
2017-07-02gnu: beets: Update to 1.4.5.Leo Famulari
* gnu/packages/music.scm (beets): Update to 1.4.5.
2017-07-02install: Re-add /bin/sh.Ludovic Courtès
Reported by Divan Santana <divan@santanas.co.za>. /bin/sh had disappeared in commit 387e175492f960d7d86f34f3b2e43938fa72dbf3. * gnu/system/install.scm (%installation-services): Add 'special-files-service-type' instance.
2017-07-02gnu: python-vobject: Update to 0.9.5.Leo Famulari
* gnu/packages/python.scm (python-vobject, python2-vobject): Update to 0.9.5.
2017-07-02gnu: vdirsyncer: Update to 0.16.0.Leo Famulari
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.0. [license]: Change to bsd-3.
2017-07-02gnu: ovmf: Fix build on x86_64.Efraim Flashner
This is a follow-up to 2eb95ade8f08bfd418b1470f1093c5b4bf2332ee. * gnu/packages/firmware.scm (ovmf)[arguments]: Fix the syntax used when following the x86_64 fork of the arguments.
2017-07-02ui: package->recutlis: Remove duplicated package names in dependencies.宋文武
* guix/ui.scm (package->recutils): Add call to 'delete-duplicates' in 'dependencies->recutils'.
2017-07-02store: 'references/substitutes' really caches its result.Ludovic Courtès
Until now the cache was always empty because 'for-each' was passed ITEMS as its second argument, and ITEMS was the empty list at that point. * guix/store.scm (references/substitutes): Add 'requested' variable. Use it as second argument of 'for-each' in base case.
2017-07-02store: 'references/substitutes' save an RPC is the trivial case.Ludovic Courtès
* guix/store.scm (references/substitutes): Save a 'substitutable-path-info' call when MISSING is empty.
2017-07-01gnu: font-google-noto: Update to 20170403.Efraim Flashner
* gnu/packages/fonts.scm (font-google-noto): Update to 20170403. [source]: Update source uri.
2017-07-01gnu: font-gnu-unifont: Update to 10.0.03.Efraim Flashner
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.03. [properties]: Add 'upstream-name' to ease updates.
2017-07-01Revert "gnu: guile-lib: Switch to Guile 2.2."Leo Famulari
This reverts commit 66b9183c4f634d9b2ae41176e4eddf0ebb218532.
2017-07-01Revert "gnu: guile-rsvg: Update to commit 05c6a2fd."Leo Famulari
This reverts commit 0fd8013fcaafa9f53c7e304b2573c0314471df89.
2017-07-01Revert "gnu: guile-gnome: Update to 2.16.5."Leo Famulari
This reverts commit ae5c6ef39378a6fa1f6bf06e8c7f50ab190c485d.
2017-07-01Revert "gnu: guile-cairo: Switch to Guile 2.2."Leo Famulari
This commit caused the build of grub-image.png to fail, prevent the build of grub.cfg and reconfiguring of GuixSD: <https://bugs.gnu.org/27551> This reverts commit e3ddb1e83296c10338d35bc687772242b2f5eac6.
2017-07-01gnu: guile-git: Update source URL.Leo Famulari
* gnu/packages/guile.scm (guile-git)[source]: Update URL.
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