| Age | Commit message (Expand) | Author |
|---|
| 2018-11-14 | gnu: Add r-activity....* gnu/packages/cran.scm (r-activity): New variable.
| Ricardo Wurmus |
| 2018-11-14 | gnu: Add r-circular....* gnu/packages/cran.scm (r-circular): New variable.
| Ricardo Wurmus |
| 2018-11-14 | gnu: Add r-overlap....* gnu/packages/cran.scm (r-overlap): New variable.
| Ricardo Wurmus |
| 2018-11-14 | gnu: Add r-acdm....* gnu/packages/cran.scm (r-acdm): New variable.
| Ricardo Wurmus |
| 2018-11-14 | gnu: Add r-acd....* gnu/packages/cran.scm (r-acd): New variable.
| Ricardo Wurmus |
| 2018-11-14 | gnu: Add r-abn....* gnu/packages/cran.scm (r-abn): New variable.
| Ricardo Wurmus |
| 2018-11-14 | gnu: Add r-rjags....* gnu/packages/cran.scm (r-rjags): New variable.
| Ricardo Wurmus |
| 2018-11-14 | gnu: Add jags....* gnu/packages/statistics.scm (jags): New variable.
| Ricardo Wurmus |
| 2018-11-13 | gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.4....* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.4.
| Ricardo Wurmus |
| 2018-11-13 | gnu: r-org-mm-eg-db: Update to 3.7.0....* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.7.0.
| Ricardo Wurmus |
| 2018-11-13 | gnu: r-org-dm-eg-db: Update to 3.7.0....* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.7.0.
| Ricardo Wurmus |
| 2018-11-13 | gnu: r-org-ce-eg-db: Update to 3.7.0....* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.7.0.
| Ricardo Wurmus |
| 2018-11-13 | gnu: r-org-hs-eg-db: Update to 3.7.0....* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.7.0.
| Ricardo Wurmus |
| 2018-11-13 | gnu: r-genomationdata: Update to 1.14.0....* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.14.0.
| Ricardo Wurmus |
| 2018-11-13 | gnu: r-go-db: Update to 3.7.0....* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.7.0.
| Ricardo Wurmus |
| 2018-11-13 | gnu: r-genomeinfodbdata: Update to 1.2.0....* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.2.0.
| Ricardo Wurmus |
| 2018-11-13 | gnu: spice-vdagent: Fix typo in desktop file....Fixes <https://bugs.gnu.org/33346>.
* gnu/packages/spice.scm (spice-vdagent)[arguments]: Fix typo in
'patch-spice-vdagent.desktop' phase.
| Taegil Bae |
| 2018-11-14 | gnu: ImageMagick: Update to 6.9.10-14....* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-14.
| Alex Vong |
| 2018-11-13 | gnu: libssh: Fetch source over HTTPS....* gnu/packages/ssh.scm (libssh)[source]: Use HTTPS URL.
| Leo Famulari |
| 2018-11-13 | gnu: direnv: Build with Go 1.9....* gnu/packages/shellutils.scm (direnv)[native-inputs]: Remove go.
[inputs]: Add go-1.9.
| Leo Famulari |
| 2018-11-13 | gnu: Poppler: Fix CVE-2018-19149....* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
(poppler-qt4, poppler-qt5): Use package/inherit.
| Leo Famulari |
| 2018-11-13 | gnu: certbot, python-acme: Update to 0.28.0....* gnu/packages/tls.scm (certbot, python-acme): Update to 0.28.0.
| Leo Famulari |
| 2018-11-13 | gnu: guix: Update to f5a2724....* gnu/packages/package-management.scm (guix): Update to f5a2724.
| Ludovic Courtès |
| 2018-11-13 | deduplication: Restore directory mtime and permissions after deduplication....Fixes <https://bugs.gnu.org/33361>.
* guix/store/deduplication.scm (replace-with-link): Call 'set-file-time'
and 'chmod' after 'rename-file'.
* tests/nar.scm ("restore-file-set with directories (signed, valid)"):
New test.
| Ludovic Courtès |
| 2018-11-13 | tests: Check file canonicalization for 'restore-file-set'....* guix/tests.scm (canonical-file?): New procedure.
* tests/nar.scm ("restore-file-set (signed, valid)"): Check that every
item of FILES matches 'canonical-file?'.
| Ludovic Courtès |
| 2018-11-13 | tests: Remove check for a feature that appeared in Guile 2.0.10....* tests/nar.scm: Remove test for 'open-sha256-input-port'.
| Ludovic Courtès |
| 2018-11-13 | services: nscd: Add 'invalidate' and 'statistics' actions....* gnu/services/base.scm (nscd-action-procedure, nscd-actions): New
procedures.
(nscd-shepherd-service): Add 'modules' and 'actions' fields.
* gnu/tests/base.scm (run-basic-test)["nscd invalidate action"]
["nscd invalidate action, wrong table"]: New tests.
* doc/guix.texi (Services): Mention 'herd doc nscd action'.
(Base Services): Document the actions.
| Ludovic Courtès |
| 2018-11-13 | services: mcron: Fix typo in comment....* gnu/services/mcron.scm (shepherd-schedule-action): Fix typo in comment.
| Ludovic Courtès |
| 2018-11-13 | nar: Access the database instead of connecting to the daemon....* guix/store/database.scm (%default-database-file): New variable.
(path-id): Export.
* guix/nar.scm (finalize-store-file): Use 'with-database' instead of
'with-store', and use 'path-id' instead of 'valid-path?'.
| Ludovic Courtès |
| 2018-11-13 | gnu: restic: Fix build phase....* gnu/packages/backup.scm (restic)[arguments]: Set "HOME" environment variable
in build phase.
| Oleg Pykhalov |
| 2018-11-13 | gnu: c-toxcore: Fetch sources from git....* gnu/packages/messaging.scm (c-toxcore)[source]: Fetch from git.
| Ricardo Wurmus |
| 2018-11-13 | gnu: wine-staging: Update to 3.20....* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.20.
* gnu/packages/wine.scm (wine-staging): Update to 3.20.
| Rutger Helling |
| 2018-11-12 | gnu: php: Update to 7.2.12....* gnu/packages/php.scm (php): Update to 7.2.12.
| Julien Lepiller |
| 2018-11-12 | store: Add a functional object cache and use it in 'lower-object'....This leads to ~25% improvements on things like:
guix system build desktop.tmpl --no-grafts -d
* guix/store.scm (<nix-server>)[object-cache]: New field.
* guix/store.scm (open-connection): Initialize it.
(cache-object-mapping, lookup-cached-object, %mcached): New procedures.
(mcached): New macro.
* guix/gexp.scm (lower-object): Use it.
* guix/grafts.scm (grafting?): New procedure.
| Ludovic Courtès |
| 2018-11-12 | tests: Add 'test-assertm' to (guix tests)....* guix/tests.scm (test-assertm): New macro.
* tests/gexp.scm (test-assertm): Remove.
* tests/profiles.scm (test-assertm): Remove.
* tests/challenge.scm (%store, test-assertm): Remove.
* tests/debug-link.scm (%store, test-assertm): Remove.
* tests/size.scm (%store, test-assertm): Remove.
| Ludovic Courtès |
| 2018-11-12 | gnu: youtube-dl: Update to 2018.11.07....* gnu/packages/video.scm (youtube-dl): Update to 2018.11.07.
| Arun Isaac |
| 2018-11-12 | gnu: vifm: Update to 0.10....* gnu/packages/vim.scm (vifm): Update to 0.10.
| Efraim Flashner |
| 2018-11-12 | gnu: go-github-com-aarzilli-golua: Fix for go-1.11....* gnu/packages/golang.scm (go-github-com-aarzilli-golua)[arguments]: Fix for go-1.11.
[native-inputs]: Remove lua.
[propagated-inputs]: Add lua.
| Pierre Neidhardt |
| 2018-11-12 | gnu: go-github-com-wtolson-go-taglib: Fix tests and build for go-1.11....* gnu/packages/golang.scm (go-github-com-wtolson-go-taglib)[arguments]: Fix tests for go-1.11.
[native-inputs]: Remove pkg-config and taglib.
[propagated-inputs]: Add pkg-config and taglib.
| Pierre Neidhardt |
| 2018-11-12 | gnu: go-gopkg.in-asn1-ber.v1: Fix tests for go-1.11....* gnu/packages/syncthing.scm (go-gopkg.in-asn1-ber.v1): Fix tests for go-1.11.
| Pierre Neidhardt |
| 2018-11-12 | gnu: go-github-com-audriusbutkevicius-cli: Fix tests for go-1.11....* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-cli): Fix tests for go-1.11.
| Pierre Neidhardt |
| 2018-11-12 | gnu: go-github-com-prometheus-common-expfmt: Fix tests for go-1.11....* gnu/packages/syncthing.scm (go-github-com-prometheus-common-expfmt): Fix tests for go-1.11.
| Pierre Neidhardt |
| 2018-11-12 | build-system/go: Plan removal of the pkg folder for go-1.11 onward....* guix/build/go-build-system.scm (install): New comment.
| Pierre Neidhardt |
| 2018-11-12 | gnu: go: Update default to 1.11....* gnu/packages/golang.scm (go): Update default to 1.11.
| Pierre Neidhardt |
| 2018-11-11 | guix system: Invoking 'guix system init' twice keeps timestamps zeroed....Fixes a bug whereby running 'guix system init config.scm /mnt' twice
would, on the second run, change timestamps in /mnt/gnu/store from the
Epoch to now. This is because the 'register-path' call would bypass the
'reset-timestamps' phase altogether in that case, as a consequence of
commit bb3b6ccb05550fbfbeb459c68819a752327d6e1e.
Reported by Christopher Baines.
* guix/scripts/system.scm (install): When TARGET/var/guix exists, delete
it. As a side-effect, this ensures that later on, the 'register-path'
call invokes 'reset-timestamps' on all the copied store items.
| Ludovic Courtès |
| 2018-11-11 | guix package: '--show' errors when asked for a non-existent package....Fixes <https://bugs.gnu.org/33323>.
Reported by swedebugia <swedebugia@riseup.net>.
* guix/scripts/package.scm (process-query): Call 'leave' when
'find-packages-by-name' returns the empty list.
* tests/guix-package.sh: Test it.
| Ludovic Courtès |
| 2018-11-11 | doc: Fix typo....* doc/guix.texi (Porting to a New Platform): Fix typo.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Laura Lazzati |
| 2018-11-11 | gnu: r-s4vectors: Update to 0.20.1....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.1.
| Ricardo Wurmus |
| 2018-11-11 | gnu: r-rcmdcheck: Update to 1.3.2....* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.2.
| Ricardo Wurmus |
| 2018-11-11 | gnu: r-ggpubr: Update to 0.1.9....* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.9.
| Ricardo Wurmus |
