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2016-12-14gnu: Update more dead Google Code home pages.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (cutadapt, mosaik, pepr)[home-page]: Update to their respective replacements.
2016-12-14gnu: mdds: Replace dead Google Code home-page.Tobias Geerinckx-Rice
* gnu/packages/boost.scm (mdds)[home-page]: Update it.
2016-12-14gnu: chibi-scheme: Replace dead Google Code home-page.Tobias Geerinckx-Rice
* gnu/packages/scheme.scm (chibi-scheme)[home-page]: Update it.
2016-12-14gnu: python-mock: Update source and home-page URIs.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-mock)[source]: Use ‘pypi-uri’. [home-page]: Replace dead Google Code home page.
2016-12-14doc: Replace dead Google Code home page for cryptsetup.Tobias Geerinckx-Rice
* doc/guix.texi (Mapped Devices): Update cryptsetup home page.
2016-12-14gnu: libosinfo: Use stable URL for pci.ids.Ricardo Wurmus
* gnu/packages/qemu.scm (libosinfo)[native-inputs]: Use a stable URL for the pci.ids file.
2016-12-14graph: Add d3js backend.Ricardo Wurmus
* d3.v3.js, graph.js: New files. * Makefile.am (EXTRA_DIST): List them. * guix/graph.scm (%d3js-backend): New variable. (emit-d3js-prologue, emit-d3js-epilogue, emit-d3js-node, emit-d3js-edge): New procedures. (%graph-backends): Add %d3js-backend.
2016-12-14graph: Add "list-backend" and "backend" options.Ricardo Wurmus
* guix/graph.scm (%graph-backends): New variable. * guix/scripts/graph.scm (lookup-backend, list-backends): New procedures. (%options): Add options for "backend" and "list-backends". (show-help): Add help texts for "backend" and "list-backend" options. (%default-options): Add "backend" default. (guix-graph): Pass backend argument to "export-graph". * doc/guix.texi (Invoking guix graph): Document the new options.
2016-12-14graph: Backend must have name and description.Ricardo Wurmus
* guix/graph.scm (<graph-backend>): Add fields "name" and "description". (%graphviz-backend): Provide values for name and description. (export-graph): Ignore name and description when matching backends. (graph-backend-name, graph-backend-description): New procedures. * tests/graph.scm (make-recording-backend): Initialize name and description fields of test graph-backend.
2016-12-14doc: Fix typo in Submitting Patches section.Maxim Cournoyer
* doc/contributing.texi (Submitting Patches): Fix "could could" typo. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-14gnu: python-cryptography: Update to 1.7.1.Marius Bakke
* gnu/packages/python.scm (python-cryptography, python2-cryptography): Update to 1.7.1. [arguments]: Remove field. (python-cryptography-vectors, python2-cryptography-vectors): Update to 1.7.1.
2016-12-14gnu: man-pages: Update to 4.09.Tobias Geerinckx-Rice
* gnu/packages/man.scm (man-pages): Update to 4.09.
2016-12-14gnu: Add rustc.David Craven
* gnu/packages/rust.scm (rustc): New variable. Co-authored-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
2016-12-14gnu: Add rust bootstrap binaries.David Craven
* gnu/packages/rust.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add rust.scm.
2016-12-14gnu: llvm: Enable install utils.David Craven
* gnu/packages/llvm.scm (llvm)[arguments]: Add -DLLVM_INSTALL_UTILS=ON to configure-flags.
2016-12-14import: Add updater for rust crates.David Craven
* guix/import/crate.scm (crate-package?, latest-release, %crate-updater): New variables. * guix/scripts/refresh.scm (%updaters): Add crate updater. * doc/guix.texi: Add crate updater to table.
2016-12-14import: Add importer for rust crates.David Craven
* guix/import/crate.scm: New file. * guix/scripts/import/crate.scm: New file. * guix/scripts/import.scm (importers): Add crate importer. * tests/crate.scm: New file. * doc/guix.texi: Add crate importer to table. * Makefile.am (MODULES, SCM_TESTS): Add files.
2016-12-14import: utils: Add some utilities.David Craven
* guix/import/utils.scm (maybe-inputs, maybe-native-inputs, package->definition): New variables.
2016-12-14build-system: Add cargo build system.David Craven
* guix/build-system/cargo.scm: New file. * guix/build/cargo-build-system.scm: New file. * Makefile.am (MODULES): Add files.
2016-12-14gnu: nss, nss-certs: Update to 3.27.2.Leo Famulari
* gnu/packages/gnuzilla.scm (nss): Update to 3.27.2. * gnu/packages/certs.scm (nss-certs): Update to 3.27.2.
2016-12-14gnu: icedtea-8: Update to 3.2.0 [fixes ↵Leo Famulari
CVE-2016-{5542,5554,5568,5573,5582,5597}]. * gnu/packages/java.scm (icedtea-8): Update to 3.2.0. [arguments]: Pass '--disable-system-pcsc' and '--disable-system-sctp' to #:configure-flags.
2016-12-14gnu: icedtea-7: Update to 2.6.8 [fixes CVE-2016-{5542,5554,5568,5573,5582,5597}]Leo Famulari
* gnu/packages/java.scm (icedtea-7): Update to 2.6.8.
2016-12-14upstream: Use first url when it lacks an extension.Ludovic Courtès
* guix/upstream.scm (package-update): Use a url from the list when it lacks an extension.
2016-12-14gnu: Add r-bit64.Ben Woodcroft
* gnu/packages/statistics.scm (r-bit64): New variable.
2016-12-14gnu: Add r-bit.Ben Woodcroft
* gnu/packages/statistics.scm (r-bit): New variable.
2016-12-14gnu: linux-libre: Update to 4.9.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash) (linux-libre): Update to 4.9. * gnu/packages/linux-libre-4.8-x86_64.conf, gnu/packages/linux-libre-4.8-i686.conf: Delete files. * gnu/packages/linux-libre-4.9-x86_64.conf, gnu/packages/linux-libre-4.9-i686.conf: New files. * Makefile.am (KCONFIGS): Update accordingly.
2016-12-14gnu: guile-next: Update to 2.1.5.Ludovic Courtès
* gnu/packages/guile.scm (guile-next): Update to 2.1.5. [properties]: Add 'upstream-name', 'ftp-server', and 'ftp-directory'.
2016-12-14gnu: usbutils: Update to 008.Ludovic Courtès
* gnu/packages/linux.scm (usbutils): Update to 008. [inputs]: Add EUDEV.
2016-12-14gnu: wireless-regdb: Update to 2016.06.10.Ludovic Courtès
* gnu/packages/linux.scm (wireless-regdb): Update to 2016.06.10.
2016-12-14services: mysql: Add port to configurationChristopher Baines
* gnu/services/databases.scm (<mysql-configuration>): Add port field. (mysql-configuration-file): Use the port field when creating the configuration file. * doc/guix.texi (Database Services): Document it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-12-13gnu: xf86-input-keyboard: Update to 1.9.0.Marius Bakke
* gnu/packages/xorg.scm (xf86-input-keyboard): Update to 1.9.0.
2016-12-13gnu: xf86-video-ati: Update to 7.8.0.Marius Bakke
* gnu/packages/xorg.scm (xf86-video-ati): Update to 7.8.0.
2016-12-13gnu: xf86-input-libinput: Update to 0.23.0.Marius Bakke
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.23.0.
2016-12-13gnu: iproute2: Update to 4.9.0.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (iproute2): Update to 4.9.0. [home-page]: Point to the latest attempt, and use HTTPS.
2016-12-13gnu: libjpeg-turbo: Fix typo.Alex Kost
This is a followup to commit e90a706e1686aaf3a1004683be8a3f3a4cbaf22e. * gnu/packages/image.scm (libjpeg-turbo): Remove extra "\".
2016-12-13gnu: epic5: Fix 'license' field to contain only licenses.Ludovic Courtès
* gnu/packages/irc.scm (epic5)[license]: Call 'license:non-copyleft'.
2016-12-13gnu: python-pyqt: Update to 5.7.Efraim Flashner
* gnu/packages/qt.scm (python-pyqt): Update to 5.7.
2016-12-13gnu: onionshare: Update to 0.9.2 (fixes CVE-2016-5026).Efraim Flashner
* gnu/packages/tor.scm (onionshare): Update to 0.9.2. [source]: Remove patch. [arguments]: Update substitutions for new version. * gnu/packages/patches/onionshare-fix-install-paths.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-12-13gnu: diamond: Update to 0.8.29.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.29.
2016-12-13gnu: orfm: Update to 0.6.1.Ben Woodcroft
* gnu/packages/bioinformatics.scm (orfm): Update to 0.6.1.
2016-12-13gnu: libsrtp: Fix building on mips.Efraim Flashner
* gnu/packages/telephony.scm (libsrtp)[arguments]: Add substitution changing variable name from 'mips' to 'mips_value'. Also substitute dictionary location in test suite.
2016-12-13gnu: libsrtp: Have source use file-name.Efraim Flashner
* gnu/packages/telephony.scm (libsrtp)[source]: Add file-name field.
2016-12-13gnu: libjpeg-turbo: Fix build on mips.Efraim Flashner
* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add substitution to set variable type before use.
2016-12-13gnu: lftp: Update to 4.7.4.Marius Bakke
* gnu/packages/ftp.scm (lftp): Update to 4.7.4. [home-page]: Change to new domain. [source]: Adjust to new domain. Add mirror.
2016-12-13gnu: python-setuptools: Update to 31.0.0.Marius Bakke
* gnu/packages/python.scm (python-setuptools, python2-setuptools): Update to 31.0.0. [source]: Use 'pypi-uri'. [license]: Update for bundled libraries.
2016-12-13gnu: duplicity: Use 'modify-phases' syntax.Marius Bakke
* gnu/packages/backup.scm (duplicity)[arguments]: Use 'modify-phases'.
2016-12-12import: cpan: Add updater.Eric Bavier
* guix/import/cpan.scm (module->dist-name): Fetch the field of interest. (cpan-fetch): Accept release name rather than module name. (fix-source-url): Rename to ... (cpan-source-url): ... this. Take metadata as parameter. (package->upstream-name, cpan-version, cpan-package?, latest-release): New procedures. (cpan-module->sexp): Use cpan-version and cpan-source-url. (%cpan-updater): New variable. * guix/scripts/refresh.scm (%updaters): Add %CPAN-UPDATER.
2016-12-12import: cpan: Move core-module? to top-level.Eric Bavier
* guix/import/cpan.scm (cpan-module->sexp): Move local core-module? procedure to ... (core-module?): ... here.
2016-12-12import: json: Silence json-fetch output.Eric Bavier
* guix/import/json.scm (json-fetch): Use http-fetch instead of url-fetch to avoid writing to stdout and a temporary file for each invocation. * guix/import/gem.scm (rubygems-fetch): Do not redirect json-fetch output to /dev/null. * guix/import/pypi.scm (pypi-fetch): Likewise.
2016-12-13gnu: xf86-video-nouveau: Update to 1.0.13.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.13.
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