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2024-12-03gnu: r-anvil: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-anvil)[native-inputs]: Add r-testthat. Change-Id: Id8cc0f631a7923204d0778d3e2da1b15c7d4fc68
2024-12-03gnu: r-caret: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-caret)[native-inputs]: Add r-fastica, r-mlmetrics, and r-themis. Change-Id: Ie165ff3c0c39146f12ea5018e8b5fc07e3d5cc26
2024-12-03gnu: Add r-themis.Ricardo Wurmus
* gnu/packages/cran.scm (r-themis): New variable. Change-Id: I647994ad7e0b377130bccb08790acf3b55dd9005
2024-12-03gnu: Add r-rose.Ricardo Wurmus
* gnu/packages/cran.scm (r-rose): New variable. Change-Id: I403f1ca3bd7d9d5bf13045e9e6f1a1809f3622d9
2024-12-03gnu: Add r-mlmetrics.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlmetrics): New variable. Change-Id: I62509d35b334033054049dbc62d1fce7c9d47e48
2024-12-03gnu: r-biobroom: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biobroom)[native-inputs]: Add r-deseq2 and r-edger. Change-Id: I231026845896b2162d34724ba405a2f5bbacc56e
2024-12-03gnu: r-enhancedvolcano: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enhancedvolcano)[native-inputs]: Add r-biocgenerics. Change-Id: I416f27e0e0f2e0c237e29f9ca6b5edeccebbec76
2024-12-03gnu: r-biocset: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset)[native-inputs]: Add r-gseabase and r-org-hs-eg-db. [arguments]: Add phase 'delete-bad-tests. Change-Id: I062af0403952e209b07488afa5b939bee60cadc0
2024-12-03gnu: r-graphite: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-graphite)[native-inputs]: Add r-checkmate. [arguments]: Disable tests. Change-Id: Ia69467f2c1516ff3510a3e7ae422f9d031fecc1f
2024-12-03gnu: r-gseabase: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gseabase)[native-inputs]: Add r-go-db, r-hgu95av2, r-hgu95av2-db, r-org-hs-eg-db, and r-runit. Change-Id: I302caa7aa57487009272a3c361bd864a474afcf2
2024-12-03gnu: Add r-hgu95av2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hgu95av2): New variable. Change-Id: Ibbadbfd247755c54e56cc22ec59172c4da098bdf
2024-12-03gnu: r-riboseqr: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-riboseqr)[native-inputs]: Add r-biocstyle. Change-Id: I969eb0cea1051578d785a04adb5fd7770b18ab62
2024-12-03gnu: r-survey: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-survey)[native-inputs]: Add r-aer, r-mass, and r-rsqlite. [arguments]: Add phase 'set-HOME. Change-Id: I6cac861edb1672cbcad3a76846223ba812224681
2024-12-03gnu: r-biocviews: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocviews)[arguments]: Disable tests. Change-Id: Ic66fd71421b041098da31a38d7101b1bf013110a
2024-12-03gnu: r-boruta: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-boruta)[native-inputs]: Add r-rferns. Change-Id: I04475e0d30040203f958ee473d5bb1e3e23634d8
2024-12-03gnu: r-anf: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-anf)[arguments]: Disable tests. Change-Id: Id30bf651b086860224d2d52cb59d50221311736b
2024-12-03gnu: r-flowcore: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowcore)[arguments]: Disable tests. Change-Id: If8c97ed20a782357cc2c01e2bdd361d59419c260
2024-12-03gnu: Add r-rferns.Ricardo Wurmus
* gnu/packages/cran.scm (r-rferns): New variable. Change-Id: I1aa80f3b5abb98c7bee5903a640cfd7b45ef1196
2024-12-03gnu: r-bedr: Disable tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-bedr)[arguments]: Disable tests. Change-Id: Ib0057f60a794b9cd0d52f5c4cd92079b74808824
2024-12-03gnu: r-bumphunter: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bumphunter)[native-inputs]: Add r-doparallel, r-runit, and r-txdb-hsapiens-ucsc-hg19-knowngene. [arguments]: Add phase 'delete-bad-tests. Change-Id: I86c3515ad5ad124742b244c085f0084342680168
2024-12-03gnu: r-batchelor: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor)[native-inputs]: Add r-bluster and r-scran. [arguments]: Add phase 'delete-bad-tests. Change-Id: Id23065c7b4b8209ddd058e1a68a88b2142df1bd1
2024-12-03gnu: r-model4you: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-model4you)[native-inputs]: Add r-plyr, r-psychotools, r-strucchange, and r-th-data. Change-Id: Ib79c42068c1d839c9ce59f58d860ae22727fe547
2024-12-03gnu: r-singler: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-singler)[native-inputs]: Add r-scuttle and r-singlecellexperiment. Change-Id: I1629f5b206a0fbc8035b1d2a31315570933b9375
2024-12-03gnu: r-spatialexperiment: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-spatialexperiment)[native-inputs]: Add r-dropletutils. [arguments]: Add phase 'set-HOME. Change-Id: Ie08e76e22d6bf0410da2f590ac5f388f316e9111
2024-12-03gnu: r-abbyyr: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-abbyyr)[native-inputs]: Add r-knitr and r-testthat. Change-Id: I22f32e7ea4f3aee0e4a8d1ba486495ea22789e0e
2024-12-03gnu: r-psupertime: Add missing input.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-psupertime)[native-inputs]: Add r-testthat. Change-Id: I9993547e2e757b4218c2229495a7eaa0c8fecbe2
2024-12-03gnu: r-demuxmix: Add missing input.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-demuxmix)[native-inputs]: Add r-testthat. Change-Id: Ia09b929b4d5bb521d58fb74f17f1ac91a4d44a60
2024-12-03gnu: r-cmdstanr: Add missing input.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-cmdstanr)[native-inputs]: Add r-testthat. Change-Id: Idd81b903e9e9a8308703c9ee8dc5583a04854678
2024-12-03gnu: r-asset: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-asset)[native-inputs]: Add r-biocgenerics. Change-Id: Iecfe6093665033d41b43d0ead6fa9d3f3fd54d81
2024-12-03gnu: r-savr: Disable vignettes.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-savr)[native-inputs]: Add r-testthat. [arguments]: Disable vignettes. Change-Id: If5a5928d3f7fde5d3360184b229894d92b715d03
2024-12-03gnu: r-lemon: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-lemon)[native-inputs]: Add r-vdiffr. Change-Id: If7cf93031ea6a97176d7c39751aa8d6fd0858ca5
2024-12-03gnu: r-sqldf: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-sqldf)[native-inputs]: Add r-svunit. Change-Id: Id62cb9aec38c547ca08f0b9ca57c190d68ef232f
2024-12-03gnu: r-regioner: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner)[native-inputs]: Add r-biocmanager. [arguments]: Add phase 'delete-bad-tests. Change-Id: I452297d9b7c776624e54bec376ed14efe4521d55
2024-12-03gnu: r-biotmle: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biotmle)[native-inputs]: Add r-biotmledata. [arguments]: Disable tests. Change-Id: Ia854a6278055a2617db62cbe360b8e108e5584c7
2024-12-03gnu: Add r-biotmledata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biotmledata): New variable. Change-Id: If0793889ddf09b31333c8331cc5ad87f72c16ac2
2024-12-03gnu: r-qdnaseq: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-qdnaseq)[native-inputs]: Add r-biocstyle. Change-Id: I6a22fb4208122c5f1a6c50421129722e5b98e11d
2024-12-03gnu: r-motifmatchr: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifmatchr)[native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19. Change-Id: I90b4c258c9685047287e1e5eedbdbe9b9ce26f8f
2024-12-03gnu: r-glmgampoi: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-glmgampoi)[native-inputs]: Add r-biocparallel, r-limma, r-mass, r-scran, and r-zoo. Change-Id: I5019e1b6efdad8c98245bef7512265b2141f78c9
2024-12-03gnu: r-activedriverwgs: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs)[native-inputs]: Add r-testthat. Change-Id: Ieb45284d6a240bc88081da0018a7163a66e78b22
2024-12-03gnu: r-refgenome: Disable tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-refgenome)[arguments]: Disable tests. Change-Id: I950bdf4463485fb1880934da096915ad50f3ae9e
2024-12-03gnu: r-sictools: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sictools)[arguments]: Disable tests. Change-Id: Id692ec7c7d5dcb17628fe818b7d116e9261ad60f
2024-12-03gnu: r-ffbase: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-ffbase)[native-inputs]: Add r-laf and r-testthat. Change-Id: I6e7e84d823e4bf4467829a78bbe8b77e26f25b8d
2024-12-03gnu: r-gutils: Add missing input.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gutils)[native-inputs]: Add r-testthat. Change-Id: I1b5e34441b48bc92bff6538378d2e2bbc7111631
2024-12-03gnu: Add r-laf.Ricardo Wurmus
* gnu/packages/cran.scm (r-laf): New variable. Change-Id: I666b904506a929bd6bfac6782d1f4f489282ae84
2024-12-03gnu: r-bamsignals: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bamsignals)[native-inputs]: Add r-rsamtools. Change-Id: Ifdca0e50c90349ba4179f80ea1fed91cd9ba37db
2024-12-03gnu: r-biocthis: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocthis)[arguments]: Disable tests. Change-Id: Icd1a846013a36c3c8555bdcb2d6ba7dce6a8e09c
2024-12-03gnu: r-rticles: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-rticles)[native-inputs]: Add r-testthat and r-withr. Change-Id: Ia5776a0f08623f79fee2f9a9a3d2a6eeb45c9ded
2024-12-03gnu: r-rsconnect: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsconnect)[native-inputs]: Add tzdata-for-tests. Change-Id: I3bf6ef36aa5e8737aa17ce74c9141b5e784fa6df
2024-12-03gnu: r-visnetwork: Disable tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-visnetwork)[arguments]: Disable tests. Change-Id: I8eb926630ff35dcf6833f6dca73b54e58d84700f
2024-12-03gnu: r-mi: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-mi)[native-inputs]: Add r-betareg, r-survival, and r-truncnorm. Change-Id: I79350494404965b3f1b610dafcd1e05f3fc0c02f
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