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2024-01-11gnu: r-paws-machine-learning: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-machine-learning): Update to 0.5.0. Change-Id: I4b5b281d41c161a9e3426d995f3b31fad8a24f84
2024-01-11gnu: r-paws-analytics: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-analytics): Update to 0.5.0. Change-Id: Ib57db7a535843486b520fd4c00d9288be2456860
2024-01-11gnu: r-paws-security-identity: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-security-identity): Update to 0.5.0. Change-Id: Ib2250b9ab5a2930b01196ea38954059fe541c867
2024-01-11gnu: r-paws-application-integration: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-application-integration): Update to 0.5.0. Change-Id: I31dd328a85ca54b92aa4e03a1bea6575ceaf7f64
2024-01-11gnu: r-paws-end-user-computing: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-end-user-computing): Update to 0.5.0. Change-Id: I10f4569db639bc4fc9cd2404e9a4a6c67bd79ace
2024-01-11gnu: r-paws-developer-tools: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-developer-tools): Update to 0.5.0. Change-Id: Icd2ed6a90b8df01c57a8a9c41320020daaa86164
2024-01-11gnu: r-paws-customer-engagement: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-customer-engagement): Update to 0.5.0. Change-Id: Ibcde22d17c635d8bfed08bc0464d58be2e87646d
2024-01-11gnu: r-paws-common: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-common): Update to 0.7.0. Change-Id: I3eef5a808b6b0918ffa6b15a01f9d1937301b352
2024-01-11gnu: r-mlr3: Update to 0.17.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3): Update to 0.17.2. Change-Id: I873e6c338e99624750da248083b8c650772dc19d
2024-01-11gnu: r-stanheaders: Update to 2.32.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-stanheaders): Update to 2.32.5. Change-Id: Ie2cccf037fe7c63d8b3574b1504b378f444fb6b3
2024-01-11gnu: r-patchwork: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-patchwork): Update to 1.2.0. Change-Id: I10574362f942182b47d29d73747355cec2d7111a
2024-01-11gnu: r-gbm: Update to 2.1.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-gbm): Update to 2.1.9. Change-Id: I2612b6656545b092e8d3ea17c6cf355f5aa0466f
2024-01-11gnu: r-yulab-utils: Update to 0.1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.3. Change-Id: Icac6a3048d7c1f6b2dc007027a2acfb34e927930
2024-01-11gnu: r-compositions: Update to 2.0-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-compositions): Update to 2.0-7. Change-Id: I79365ad9f61257a1e8feb4697f51db9615845813
2024-01-11gnu: r-targets: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-targets): Update to 1.4.1. Change-Id: Ifc7b526b2f0b198875111a17568f40f660a1ac9d
2024-01-11gnu: r-tarchetypes: Update to 0.7.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.11. Change-Id: Ia87abdf6690b3db8e43be009e8948777293f0ead
2024-01-11gnu: r-writexls: Update to 6.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-writexls): Update to 6.5.0. Change-Id: I148760efa41cc8b4c6762638629f79296e61ca7a
2024-01-11gnu: r-ggrepel: Update to 0.9.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggrepel): Update to 0.9.5. Change-Id: Ib87cbfacc9f3fce1d1e4bc0d9cbb0fb467522bfb
2024-01-11gnu: r-rcpp: Update to 1.0.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.12. Change-Id: Ia0e182858d8693d00d646bf4f4f38e064674f5bc
2024-01-11gnu: r-glue: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-glue): Update to 1.7.0. Change-Id: Ic843c657fe483c677af10b7a98bdb654d0441561
2024-01-11gnu: r-reprex: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-reprex): Update to 2.1.0. Change-Id: I3c5e7f79cd7b6171ae9ec4562ce8866455f05ae6
2024-01-11gnu: r-astsa: Update to 2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-astsa): Update to 2.1. Change-Id: Ia3ceb05742c9acdd8fbb117f342d526bf7ee1bc1
2024-01-11gnu: r-ggpp: Update to 0.5.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.6. Change-Id: Ib9a5bb2ff59381f301f481e189a196706cdbb928
2024-01-11gnu: r-zcompositions: Update to 1.5.0-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-zcompositions): Update to 1.5.0-1. Change-Id: I472ebcf9f2d3f1d401f19b4a67b27bb892249cac
2024-01-11gnu: r-castor: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-castor): Update to 1.8.0. [propagated-inputs]: Add r-jsonlite. Change-Id: I00ffcf5cbcd4badf644ec2572421c6df31792670
2024-01-11gnu: r-rcurl: Update to 1.98-1.14.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.14. [native-inputs]: Move libxml2 from here... [inputs]: ...to here. Change-Id: Ib1b3326a997c7f56053715682b43606b3153c140
2024-01-11gnu: r-rstan: Update to 2.32.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstan): Update to 2.32.5. [properties]: Tell updater to leave tzdata-for-tests. Change-Id: I8a12fdea4a0197fae1610826be9ccb856c25afb7
2024-01-11gnu: r-topicmodels: Update to 0.2-16.Ricardo Wurmus
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-16. [properties]: Tell updater not to remove GSL from inputs. Change-Id: I7940d546af32240b3a45bc64f7b1b2361ea8bf0f
2024-01-11gnu: r-rpostgresql: Update to 0.7-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7-6. [properties]: Tell updater not to remove postgresql input. Change-Id: Id88180f2781022b1554286f4beee85183ff474ac
2024-01-11gnu: r-readr: Update to 2.1.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-readr): Update to 2.1.5. Change-Id: If3329e6b01db9fb457491ac44cdbbc97b0ec7c7c
2024-01-11gnu: python-afdko: Disable failing test.Ricardo Wurmus
* gnu/packages/fontutils.scm (python-afdko)[arguments]: Disable test_alt_missing_glyph. Change-Id: I49f9d27f61955fe2bf9dd9d5cf22499e813ff3d0
2024-01-10gnu: openjdk11: Fix time bomb in ‘GenerateCurrencyData.java’.Ricardo Wurmus
Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk11)[source]: Add patch. Change-Id: I5ff53b8dd90598721a6c3814980c6553013b347c
2024-01-10gnu: openjdk10: Simplify.Ricardo Wurmus
* gnu/packages/java.scm (openjdk10)[arguments]: Remove trailing #T from build phase. Change-Id: Icdb082b250704fe6de3a5e4323f29fa5db8446c7
2024-01-10gnu: openjdk10: Fix time bomb in ‘GenerateCurrencyData.java’.Ricardo Wurmus
Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk10)[source]: Add patch. * gnu/packages/patches/openjdk-currency-time-bomb2.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I42fc14d305883f672cd6764a0ee6462852e41a5b
2024-01-10gnu: Fix patch location.Ricardo Wurmus
This is a follow-up to commit db7488a7fbd829d25b0b5c5e53b1c680b67832b1. * gnu/local.mk (dist_patch_DATA): Restore "packages/" prefix. Change-Id: I1f8e420e75c3f4e1927dac935c2de337fd1306eb
2024-01-10gnu: openjdk9: Simplify.Ricardo Wurmus
* gnu/packages/java.scm (openjdk9)[source]: Remove BEGIN. [arguments]: Delete trailing #T from build phases. Change-Id: If011dc595c1b9b0d79fd5bb727a8680d1ad4d100
2024-01-10gnu: openjdk9: Fix time bomb in ‘GenerateCurrencyData.java’.Ricardo Wurmus
Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk9)[source]: Add patch. * gnu/packages/patches/openjdk-currency-time-bomb.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I45ca1fe5bad922307eba64d46a330a8f233c0f55
2024-01-10gnu: python-distributed: Disable breaking test.Ricardo Wurmus
This test times out since the merge of the mesa-updates branch. * gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_tell_workers_when_peers_have_left. Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
2024-01-10gnu: Add r-jaspar2020.nafkhamdc
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable. Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
2024-01-10gnu: Add r-dsb.nafkhamdc
* gnu/packages/bioconductor.scm (r-dsb): New variable. Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
2024-01-10gnu: r-signac: Update to 1.12.0-1.8ecdde2.nafkhamdc
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.12.0-1.8ecdde2. Change-Id: Ib852f7a23768383fc62d60577f2aaa893c509317
2024-01-10gnu: Add r-escape.nafkhamdc
* gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
2024-01-10gnu: Add python-telomerecat.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-telomerecat): New variable. Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c
2024-01-10gnu: Add python-parabam.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-parabam): New variable. Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b
2024-01-10gnu: icedtea: Fix time bomb in ‘GenerateCurrencyData.java’.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/68333>. * gnu/packages/java.scm (icedtea-7)[drop]: Add optional ‘patches’ parameter and honor it. [native-inputs]: Add patch for “jdk-drop”. (icedtea-8): Likewise. * gnu/packages/patches/jdk-currency-time-bomb.patch, gnu/packages/patches/jdk-currency-time-bomb2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Change-Id: I3b4cf562ce4bedb87ce0e7c289e431fbb0dbb6f8
2024-01-10gnu: mesa: Fix cross-compilation.Zheng Junjie
* gnu/packages/gl.scm(mesa)[arguments]<#:phases>: When cross-compiling, force the use of the cmake method to find llvm. Change-Id: I27f6f4d9d71028c15588eeade48d3a918c042b9c Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-10gnu: yaml-cpp: Update to 0.8.0.Zheng Junjie
* gnu/packages/serialization.scm (yaml-cpp): Update to 0.8.0. Change-Id: I927111f2d103dbb30ff336b64dd4ab90c22312a0 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-10gnu: Add cl-stripe.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-stripe): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: Ideeff671b8577bcfceb241a86624ac26f1d077f7
2024-01-10gnu: nyxt: Update to 3.11.0.Andre A. Gomes
* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-01-10gnu: cl-prompter: Update to 0.1.1-0.7890ed5.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-prompter): Update to 0.1.1-0.7890ed5. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: I65a7d23d4a889c1d7c4821e83b8ea3a56701a5c8
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