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2024-04-22gnu: r-factominer: Update to 2.11....* gnu/packages/cran.scm (r-factominer): Update to 2.11. Change-Id: Id24133b66e55ef6b41710dbc98cbb3daf2ef4b9f Ricardo Wurmus
2024-04-22gnu: r-seriation: Update to 1.5.5....* gnu/packages/cran.scm (r-seriation): Update to 1.5.5. Change-Id: I1632302f747d4f64e0b26baf9213525c05b6bacb Ricardo Wurmus
2024-04-22gnu: python-commonroad-io: Relax requirements....* gnu/packages/simulation.scm (python-commonroad-io)[arguments]: Accept 3.20.2 when 3.20.1 is wanted. Change-Id: I5ad0689f827eda8ec1a7ec74008d04fb6d9f5870 Ricardo Wurmus
2024-04-22gnu: python-omegaconf: Fix build system errors....* gnu/packages/python-xyz.scm (python-omegaconf)[arguments]: Fix syntax error in version specification; do not trigger errors on deprecation warnings. Change-Id: Ida873c11255ffb65d888378cdd77a9205163016a Ricardo Wurmus
2024-04-22gnu: python-deeptools: Replace python-nose with python-pytest....* gnu/packages/bioinformatics.scm (python-deeptools)[native-inputs]: Replace python-nose with python-pytest. Change-Id: Icba4ed3a464bfa36616aabe2cbbb26bfabec40aa Ricardo Wurmus
2024-04-22gnu: java-easymock-class-extension: Use java-asm-8....This is necessary to avoid invalid instructions coming from the incompatible build of java-asm. * gnu/packages/java.scm (java-easymock-class-extension)[inputs]: Replace java-asm with java-asm-8. Change-Id: Iff11a54fe62ba71a6d5e62fe80c08b1539c6cee0 Ricardo Wurmus
2024-04-22gnu: python-pydantic-2: Ignore sensitive tests....* gnu/packages/python-xyz.scm (python-pydantic-2)[arguments]: Ignore north star tests. Change-Id: Ic305f95f8d1399a4d777dad35fcee9e28f16c907 Ricardo Wurmus
2024-04-22gnu: python-asdf-astropy: Add missing test inputs....* gnu/packages/astronomy.scm (python-asdf-astropy)[native-inputs]: Add python-pytest and python-pytest-xdist. Change-Id: I1b08cf3937d4d17e034bebf6c1e971e43ca79839 Ricardo Wurmus
2024-04-22gnu: python-zarr: Update to 2.17.2....* gnu/packages/python-xyz.scm (python-zarr): Update to 2.17.2. [arguments]: Delete two flaky tests. Change-Id: I1ab1c90f17d17a03c6cd76bbeb9112df741cc9c6 Ricardo Wurmus
2024-04-22gnu: python-xarray-dataclasses: Add missing test input....* gnu/packages/python-science.scm (python-xarray-dataclasses)[native-inputs]: Add python-pytest. Change-Id: I137d49380d772f11f75837aa9a915ced85cfc1a2 Ricardo Wurmus
2024-04-22gnu: cpplint: Use pyproject-build-system....* gnu/packages/cpp.scm (cpplint)[build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase. Change-Id: I270de2cafe75ef2d7280dee884a0aeb060f2aa32 Ricardo Wurmus
2024-04-22gnu: python-pandas-2: Skip expensive tests....* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Set PANDAS_CI variable. Change-Id: I7c400ff260b3c833be1a55a30de021a81a5cbacb Ricardo Wurmus
2024-04-22gnu: Add python-pandas-2....* gnu/packages/python-science.scm (python-pandas-2): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I7f0510f9021d4eac3c981e5e58f73dc3ec7efd2f Nicolas Graves
2024-04-22gnu: Add python-pytest-next....* gnu/packages/check.scm (python-pytest-next): New variable. Nicolas Graves
2024-04-22gnu: python-contourpy: Update to 1.1.1....* gnu/packages/python-xyz.scm (python-contourpy): Update to 1.1.1. Change-Id: I31ac27bb7f41f04c82baba2650012d4730a4b684 Nicolas Graves
2024-04-22gnu: python-openpyxl: Update to 3.0.10....* gnu/packages/python-xyz.scm (python-openpyxl): Update to 3.0.10. [build-system]: Use pyproject-build-system. [arguments]: Delete check phase replacement. Change-Id: I1a537050f1e9f109189150d0d73e87bbd87dcb00 Nicolas Graves
2024-04-22gnu: python-pytest-xdist: Use pyproject-build-system....* gnu/packages/check.scm (python-pytest-xdist): Use pyproject-build-system. Nicolas Graves
2024-04-22gnu: python-jinja2: Update to 3.1.2....* gnu/packages/python-xyz.scm (python-jinja2): Update to 3.1.2. Format. [build-system]: Use pyproject-build-system. [arguments]: Remove uneeded argument. Nicolas Graves
2024-04-22gnu: python-pyproject-metadata: Update to 0.7.1....* gnu/packages/python-xyz.scm (python-pyproject-metadata): Update to 0.7.1. Nicolas Graves
2024-04-22gnu: Add meson-python/newer....* gnu/packages/build-tools.scm (meson-python/newer): New variable. Change-Id: I5f34a1abdffcc2e782a2956c199f1c303911069c Ricardo Wurmus
2024-04-22gnu: meson/newer: Update to 1.2.1....* gnu/packages/build-tools.scm (meson/newer): Update to 1.2.1. Nicolas Graves
2024-04-22gnu: Add python-pims....* gnu/packages/image-processing.scm (python-pims): New variable. Change-Id: I33e89dd865a38b526a1f766cf321a6c67a170a36 Ricardo Wurmus
2024-04-22gnu: Add python-spatial-image....* gnu/packages/image-processing.scm (python-spatial-image): New variable. Change-Id: I0e2bbfb94499aca71b33703153ad408530b60658 Ricardo Wurmus
2024-04-22gnu: Add python-xarray-datatree....* gnu/packages/python-science.scm (python-xarray-datatree): New variable. Change-Id: I403f241b6daae8b5c835f4517a1dceca0393f8e6 Ricardo Wurmus
2024-04-22gnu: Add python-xarray-dataclasses....* gnu/packages/python-science.scm (python-xarray-dataclasses): New variable. Change-Id: I55f258e36ea70a2efb142bd652a81d70771a457c Ricardo Wurmus
2024-04-22gnu: Add python-slicerator....* gnu/packages/python-xyz.scm (python-slicerator): New variable. Change-Id: I9f24707f16cb34d25f6423b03fd07ea122d55064 Ricardo Wurmus
2024-04-22gnu: python-nbclient: Update to 0.6.6....* gnu/packages/jupyter.scm (python-nbclient): Update to 0.6.6. [build-system]: Use pyproject-build-system. [propagated-inputs]: Remove python-nest-asyncio; add python-jupyter-core. Change-Id: Idb70e781c508be389f08c0cab439644852b81577 Ricardo Wurmus
2024-04-22gnu: Add python-ipfsspec....* gnu/packages/python-xyz.scm (python-ipfsspec): New variable. Change-Id: I1fe0c2523616b9567501ef369c07b61fcacbee81 Ricardo Wurmus
2024-04-22gnu: Add python-cyvcf2....* gnu/packages/bioinformatics.scm (python-cyvcf2): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I0db07e7b5840f5c1f5c68512ffabb3d6b39ab95c Alexis Simon
2024-04-22gnu: r-bayseq: Update to 2.36.2....* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.36.2. Change-Id: Ic709181286a25fb2540d73991196cd54302f6fa2 Ricardo Wurmus
2024-04-22gnu: r-gsva: Update to 1.50.5....* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.5. Change-Id: I18584e8766e8377f18321b4a4991edbbc933cbe2 Ricardo Wurmus
2024-04-22gnu: r-alevinqc: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.18.1. Change-Id: I84abb3751c44f4679ebf6c5c39f3b7d0027f002e Ricardo Wurmus
2024-04-22gnu: r-lme4: Update to 1.1-35.3....* gnu/packages/statistics.scm (r-lme4): Update to 1.1-35.3. Change-Id: I20c5839dd74fc596406e129086cf58fb78d06297 Ricardo Wurmus
2024-04-22gnu: r-diptest: Update to 0.77-1....* gnu/packages/statistics.scm (r-diptest): Update to 0.77-1. Change-Id: I4f8c677984f68d3d8a093d5bdd497352e4c8d4c4 Ricardo Wurmus
2024-04-22gnu: r-matrixstats: Update to 1.3.0....* gnu/packages/statistics.scm (r-matrixstats): Update to 1.3.0. Change-Id: I660f58800789f1e7e0a2380f3503597b62c0e5ba Ricardo Wurmus
2024-04-22gnu: r-rcpparmadillo: Update to 0.12.8.2.1....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.8.2.1. Change-Id: Ibfc58ce4512ee1c50f9041708ae18b296f3987b1 Ricardo Wurmus
2024-04-22gnu: r-testthat: Update to 3.2.1.1....* gnu/packages/statistics.scm (r-testthat): Update to 3.2.1.1. Change-Id: I57dbc93ab3dff959c3cb468e0fc71cf5865c4c65 Ricardo Wurmus
2024-04-22gnu: r-crul: Update to 1.4.2....* gnu/packages/cran.scm (r-crul): Update to 1.4.2. Change-Id: I982b33d77d6a14803ad398c106131558e512f207 Ricardo Wurmus
2024-04-22gnu: r-paws-common: Update to 0.7.2....* gnu/packages/cran.scm (r-paws-common): Update to 0.7.2. Change-Id: I48bc944013c82dcdcdc2a2063b3c4f925c733c03 Ricardo Wurmus
2024-04-22gnu: r-tensorflow: Update to 2.16.0....* gnu/packages/cran.scm (r-tensorflow): Update to 2.16.0. Change-Id: I6f356117eaa78961a8ea6689b08a8dae1778de03 Ricardo Wurmus
2024-04-22gnu: r-pkgdown: Update to 2.0.8....* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.8. Change-Id: Ib96ecbb5a78e8a53ecceae9c7b9e814690009986 Ricardo Wurmus
2024-04-22gnu: r-mlr3misc: Update to 0.15.0....* gnu/packages/cran.scm (r-mlr3misc): Update to 0.15.0. Change-Id: I96f607787c4816c849ad7fa23ebb62855bf4f24e Ricardo Wurmus
2024-04-22gnu: r-tidytext: Update to 0.4.2....* gnu/packages/cran.scm (r-tidytext): Update to 0.4.2. Change-Id: I3ec30c70dee2b8ab719a1435db5e97354bc93459 Ricardo Wurmus
2024-04-22gnu: r-butcher: Update to 0.3.4....* gnu/packages/cran.scm (r-butcher): Update to 0.3.4. Change-Id: I31145414549fb55b36b97e823797d645a4248dde Ricardo Wurmus
2024-04-22gnu: r-dunn-test: Update to 1.3.6....* gnu/packages/cran.scm (r-dunn-test): Update to 1.3.6. Change-Id: Ic8efd6dfd893719522f1c8dab05a782807a25c09 Ricardo Wurmus
2024-04-22gnu: r-tuner: Update to 1.4.7....* gnu/packages/cran.scm (r-tuner): Update to 1.4.7. Change-Id: I709c7b844f67977b0fe367ff21196d221884761e Ricardo Wurmus
2024-04-22gnu: r-uwot: Update to 0.2.1....* gnu/packages/cran.scm (r-uwot): Update to 0.2.1. [native-inputs]: Add r-knitr. Change-Id: Ife200a7ee6316f7accdb596e8bdb709b65461ba2 Ricardo Wurmus
2024-04-22gnu: r-ggfortify: Update to 0.4.17....* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.17. Change-Id: If1188165f5050b247ace0507d6c9736714014d94 Ricardo Wurmus
2024-04-22gnu: r-optparse: Update to 1.7.5....* gnu/packages/cran.scm (r-optparse): Update to 1.7.5. Change-Id: I7154363b719df7595e6c213b7dedb0ea9f65401c Ricardo Wurmus
2024-04-22gnu: r-bookdown: Update to 0.39....* gnu/packages/cran.scm (r-bookdown): Update to 0.39. Change-Id: Ib6dd434091af59fb191498f74ddd7dcd793f3818 Ricardo Wurmus
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