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2024-01-31gnu: dhtnet: Update to 0.0.1-1.41848a2....* gnu/packages/networking.scm (dhtnet): Update to 0.0.1-1.41848a2. [inputs]: Add yaml-cpp. Change-Id: I399260201e09185c33bbd441eb1a877a43e10d9f Maxim Cournoyer
2024-01-31gnu: go-honnef-co-go-tools: Update to 0.4.6....* gnu/packages/golang-check.scm (go-honnef-co-go-tools): Update to 0.4.6. Change-Id: Iac26c3147104a06a72e5910edb9fb3deba6be486 Sharlatan Hellseher
2024-01-31gnu: golang-check: Sort packages alphabetically....This commit is a housekeeping measure to prepare for natural and structured enlargement. * gnu/packages/golang-check.scm: Improve module commentary introduce sections for libraries and executables and sort packages alphabetically. Change-Id: Ifcac216c1c04e569cfdf2a7d902165a36ed06b32 Sharlatan Hellseher
2024-01-31gnu: go-honnef-co-go-tools: Update homepage....Fixing lint warning by updating home page to actual one found on project's GitHub page: URI <https://honnef.co/go/tools> returned suspiciously small file (333 bytes) * gnu/packages/golang-check.scm (go-honnef-co-go-tools) [home-page]: Update it. Change-Id: I8956b146ff3f826c11b03212c365cf91120380b6 Sharlatan Hellseher
2024-01-31gnu: go-honnef-co-go-tools: Improve synopsis and description....* gnu/packages/golang-check.scm (go-honnef-co-go-tools): Improve synopsis and description. Change-Id: I357626457418f8c6f1b05918226c33f7faa88d49 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-01-31gnu: Add go-structlayout-pretty....* gnu/packages/golang-check.scm (go-structlayout-pretty): New variable. Change-Id: I622a991b12708ee52eb412a3c6b3fbeeb512843d Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-01-31gnu: Add go-structlayout-optimize....* gnu/packages/golang-check.scm (go-structlayout-optimize): New variable. Change-Id: I7e1ce9acbe3ec09cc8b441de4816b247a2742938 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-01-31gnu: Add go-structlayout....* gnu/packages/golang-check.scm (go-structlayout): New variable. Change-Id: I7440cdf75238fc73451cefc73b3ce3eb3d4da323 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-01-31gnu: Add go-staticcheck....* gnu/packages/golang-check.scm (go-staticcheck): New variable. Change-Id: I82ce27df1bdbd79ae4740928e0661b585289d02b Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-01-31gnu: Add go-keyify....* gnu/packages/golang-check.scm (go-keyify): New variable. Change-Id: I99d41a18cb0e00dd35bef9c2c8fce12748f24ad4 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-01-31gnu: Remove go-github-com-kisielk-gotool....* gnu/packages/golang-check.scm (go-github-com-kisielk-gotool): Delete variable. Change-Id: Ic99bba40f4cd66335656f27bf7dd97d1b90bb8f1 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-01-31gnu: go-torproject-org-pluggable-transports-goptlib: Move to (gnu packages go......* gnu/packages/golang.scm (go-torproject-org-pluggable-transports-goptlib): Move from here ... gnu/packages/golang-crypto.scm: ... to here. Change-Id: I3bc97e64bd3680405c90eb84c2d7d3c7ff9092e0 Sharlatan Hellseher
2024-01-31gnu: go-torproject-org-pluggable-transports-goptlib: Fix import path....* gnu/packages/golang.scm (go-torproject-org-pluggable-transports-goptlib) [arguments] <#:import-path>: Use actual module name from go.mod. (go-github-com-operatorfoundation-shapeshifter-transports) [arguments] <#:phases>: Remove obsolete 'patch phase for goptlib. (go-github-com-operatorfoundation-obfs4) [arguments] <#:phases>: Likewise. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Ib2e49164e2c750694101b497afe1be67c7fe6302 Sarah Morgensen
2024-01-31services: certbot: Add one-shot service to renew certificates....* gnu/services/certbot.scm (certbot-renewal-one-shot): New procedure. (certbot-service-type)[extensions]: Add it to shepherd-root extension. (certbot-command): Make connection errors return a different exit code. (certbot-activation): Remove message with certificate renewal instructions. Change-Id: I614ac6214a753dba0396e2385a75926c8355caa1 Signed-off-by: Clément Lassieur <clement@lassieur.org> Carlo Zancanaro
2024-01-31services: certbot: Reload nginx in deploy hook....* gnu/services/certbot.scm (certbot-deploy-hook): Reload nginx. * doc/guix.texi (Certificate services): Remove deploy-hook from example. Change-Id: Ibb10481170a6fda7df72492072b939dd6a6ad176 Signed-off-by: Clément Lassieur <clement@lassieur.org> Carlo Zancanaro
2024-01-31services: certbot: Create self-signed certificates before certbot runs....* gnu/services/certbot.scm (<certificate-configuration>): Add start-self-signed? field. (generate-certificate-gexp): New procedure. (certbot-activation): Generate self-signed certificates when start-self-signed? is #t. * doc/guix.texi (Certificate services): Document start-self-signed?. Change-Id: Icfd85ae0c3e29324acbcde6ba283546cf0e27a1d Signed-off-by: Clément Lassieur <clement@lassieur.org> Carlo Zancanaro
2024-01-31services: certbot: Symlink certificates to /etc/certs....* gnu/services/certbot.scm (certbot-deploy-hook): New procedure. (certbot-command): Pass new deploy hook to certbot. * doc/guix.texi: Replace "letsencrypt/live" with "certs" throughout, except in the certbot deploy-hook description. Change-Id: I2ba5e4903d1e293e566b732a84b07d5a134b697d Signed-off-by: Clément Lassieur <clement@lassieur.org> Carlo Zancanaro
2024-01-31gnu: cl-maidenhead: Update to 1.1-1.4b9c38e....* gnu/packages/lisp-xyz.scm (sbcl-maidenhead): Update to 1.1-1.4b9c38e. Change-Id: I766a3d70fc330cf0f1628091c6ed52f1085199e5 Guillaume Le Vaillant
2024-01-31gnu: cl-command-line-args: Update to 0.1.0....* gnu/packages/lisp-xyz.scm (sbcl-command-line-args): Update to 0.1.0. [inputs]: Add sbcl-charje.documentation. Change-Id: Iadac4decc64f2333878dd5b106e1e82c33b40e30 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Charles
2024-01-31maint: Add gnupg to the manifest....* manifest.scm: Add gnupg. Change-Id: Id5e90f87e5c3a07aa3e49afa97cc0b6d3ce71b41 Ludovic Courtès
2024-01-31channels: ‘latest-channel-instances’ traverses user-provided channels first....Previously, ‘latest-channel-instances’ would perform a depth-first traversal of channels. Since dependencies specified in ‘.guix-channel’ are usually less specific that those provided by the user, this would lead to the use of instances corresponding to those less specific specs, which in turn might declare dependencies that do not exist for the more specific instances. This commit changes ‘latest-channel-instances’ to perform a breadth-first traversal, thereby giving user-supplied channels higher precedence over dependencies found via ‘.guix-channel’. Fixes <https://issues.guix.gnu.org/68822>. * guix/channels.scm (latest-channel-instances)[ignore?]: Remove. [instance-name, same-named?, more-specific?]: New procedures. Rewrite as a breadth-first traversal using a regular loop. * tests/channels.scm ("latest-channel-instances reads dependencies from most-specific instance"): New test. Change-Id: Iba518145cfd209f04293a56246dbfee3b714650b Ludovic Courtès
2024-01-31channels: Tweak test....* tests/channels.scm ("latest-channel-instances excludes duplicate channel dependencies"): Use ‘equal?’ rather than ‘string=?’ since we can get #f. Change-Id: I437b9d7e23200cf0c98b1593e68b1d355bc2de01 Ludovic Courtès
2024-01-31gnu: torbrowser: Copy buildID from the official build....* gnu/packages/tor.scm (%moz-build-date): Update to 20240115174022. Reported-by: André Batista <nandre@riseup.net> Change-Id: Ia057d6efe9db9e04ece03d994ee226ecdbc6cc04 Clément Lassieur
2024-01-30Revert "gnu: Add minify."...This reverts commit f8c2d8141efef4565d12d8247bade069889b720e. Fixes: error: go-github-com-tdewolff-minify-v2: unbound variable <https://ci.guix.gnu.org/eval/1086875/log/raw> Change-Id: I26e02842980cf09e924ac1cae8f3a6421a005276 Sharlatan Hellseher
2024-01-30teams: go: Add golang-xyz.scm to scope....* etc/teams.scm (go): Add "gnu/packages/golang-xyz.scm". Change-Id: I580eadf52b631c6582e256a2900786b53483a466 Sharlatan Hellseher
2024-01-30gnu: Add minify....* gnu/packages/web.scm (minify): New variable. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Co-authored-by: Hilton Chain <hako@ultrarare.space> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I7289c77a17f63501b6c7771606d396241333ac3a Thomas Ieong
2024-01-30gnu: Add go-github-com-matryer-try....* gnu/packages/golang-check.scm (go-github-com-matryer-try): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Ic354425938374fcd29e871a597da63a7a390cfa1 Thomas Ieong
2024-01-30gnu: Add go-github-com-djherbis-atime....* gnu/packages/golang-xyz.scm (go-github-com-djherbis-atime): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I320070d68e7f590f830060904f5cbdf59d839d1d Thomas Ieong
2024-01-30gnu: Add (gnu packages golang-xyz) module....* gnu/packages/golang-xyz.scm: New file. * gnu/local.mk: Add to gnu/packages/golang-xyz.scm scope. Change-Id: I25e434de1adc29c2f08146f040755287c63632d6 Sharlatan Hellseher
2024-01-30gnu: go-github-com-go-jose-go-jose-v3: Move to (gnu packages golang-web)....Drop inheritance from go-gopkg-in-square-go-jose-v2 as it's archived by the owner on Feb 27, 2023. * gnu/packages/golang.scm (go-github-com-go-jose-go-jose-v3): Move from here ... * gnu/packages/golang-web.scm: ... to here. Change-Id: I67838e18a43d93e5ae3b62e9645b7d22cf474103 Sharlatan Hellseher
2024-01-30gnu: axoloti-patcher: Add missing headers....* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Include generic headers in search paths. Change-Id: I2e1819966eb657ba4a7e0c823e6686de8599dd9a Ricardo Wurmus
2024-01-30gnu: axoloti-patcher: Use G-expression....* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Use G-expression; delete 'make-git-checkout-writable phase. Change-Id: I4f9b98351f1752391211f1aed84d484184d32771 Ricardo Wurmus
2024-01-30gnu: yggdrasil: Update to 0.5.5....* gnu/packages/networking.scm (yggdrasil): Update to 0.5.5. Change-Id: Iba086d544e8225ec1b08de80f0fc3f01aa1f17b3 Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Artyom V. Poptsov
2024-01-30gnu: guile-hoot: Update to 0.3.0....* gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.3.0. Change-Id: I355d4b11bdd45bf87e3d7227f259907b1e7d57bd David Thompson
2024-01-30gnu: r-scran: Update to 1.30.2....* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.2. Change-Id: I49388f6307f88cb671b0a721cc4c82a4804312c6 Ricardo Wurmus
2024-01-30gnu: r-bioccheck: Update to 1.38.2....* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.2. [propagated-inputs]: Remove r-httr; add r-httr2 and r-rvest. Change-Id: I5bcf99f2e3e93141fe502f061c2f347d4f0783bc Ricardo Wurmus
2024-01-30gnu: r-flowcore: Update to 2.14.1....* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.1. Change-Id: I7a8002206aaab85a722463a81939d7cea7d61644 Ricardo Wurmus
2024-01-30gnu: r-rsubread: Update to 2.16.1....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.1. Change-Id: Id01d956d2f76347270d05961dba13f65b268862a Ricardo Wurmus
2024-01-30gnu: r-edger: Update to 4.0.12....* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.12. Change-Id: If99f10f80fb7c085863d2da79cfce2b94af71543 Ricardo Wurmus
2024-01-30gnu: r-biostrings: Update to 2.70.2....* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.2. Change-Id: Id43796f35c5afe6fbe3a37d72e111d28937254a2 Ricardo Wurmus
2024-01-30gnu: r-biomart: Update to 2.58.1....* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.1. Change-Id: I6304e3be6919367f5d9d99ddb7aae75ab39b9985 Ricardo Wurmus
2024-01-30gnu: r-robustbase: Update to 0.99-2....* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-2. Change-Id: Ic6a248fd55b6b4467742040a884ed25e9d090f47 Ricardo Wurmus
2024-01-30gnu: r-viridis: Update to 0.6.5....* gnu/packages/statistics.scm (r-viridis): Update to 0.6.5. Change-Id: Iaa83edbc2a304e0327f8815967f2e28b686691a0 Ricardo Wurmus
2024-01-30gnu: r-commonmark: Update to 1.9.1....* gnu/packages/statistics.scm (r-commonmark): Update to 1.9.1. Change-Id: Ifccd39448f0d6181bfcede089aa922cd60c5293c Ricardo Wurmus
2024-01-30gnu: r-data-table: Update to 1.15.0....* gnu/packages/statistics.scm (r-data-table): Update to 1.15.0. Change-Id: I2187d368fb461d72b07e3445bad0240ecc5cd6f1 Ricardo Wurmus
2024-01-30gnu: r-tfruns: Update to 1.5.2....* gnu/packages/cran.scm (r-tfruns): Update to 1.5.2. Change-Id: Iefffe073fb7d2d54e190b3d0433dcb760dad9a10 Ricardo Wurmus
2024-01-30gnu: r-spatstat-geom: Update to 3.2-8....* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-8. Change-Id: Iab7190ff6dbe409cc1b400f6a69001a8c13ac1bc Ricardo Wurmus
2024-01-30gnu: r-iheatmapr: Update to 0.7.1....* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.1. Change-Id: I83046a2d71d29a18dc15a7a568d0212947b936dd Ricardo Wurmus
2024-01-30gnu: r-emoa: Update to 0.5-2....* gnu/packages/cran.scm (r-emoa): Update to 0.5-2. Change-Id: Ia1138543ad4a2acf104c4fc19e2d75cfa07eed81 Ricardo Wurmus
2024-01-30gnu: r-tidygraph: Update to 1.3.1....* gnu/packages/cran.scm (r-tidygraph): Update to 1.3.1. Change-Id: I597eaa3eb3afba90462b5ca0a7fed262ecf1aa60 Ricardo Wurmus