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2021-12-05gnu: adapterremoval: Remove reference to %outputs....* gnu/packages/bioinformatics.scm (adapterremoval)[arguments]: Remove reference to %outputs by using a gexp. Ricardo Wurmus
2021-12-05gnu: bbmap: Remove reference to %build-inputs....* gnu/packages/bioinformatics.scm (bbmap)[arguments]: Remove reference to %build-inputs by using a gexp. Ricardo Wurmus
2021-12-05gnu: intervaltree: Remove reference to %outputs....* gnu/packages/bioinformatics.scm (intervaltree)[arguments]: Remove reference to %outputs by using a gexp. Ricardo Wurmus
2021-12-05gnu: biobambam2: Remove reference to %build-inputs....* gnu/packages/bioinformatics.scm (biobambam2)[arguments]: Remove reference to %build-inputs by using a gexp. Ricardo Wurmus
2021-12-05gnu: sjcount: Remove reference to %build-inputs....* gnu/packages/bioinformatics.scm (sjcount)[arguments]: Remove reference to %build-inputs by using a gexp. Ricardo Wurmus
2021-12-05gnu: sjcount: Remove trailing #T....* gnu/packages/bioinformatics.scm (sjcount)[arguments]: Remove trailing #T from build phases. Ricardo Wurmus
2021-12-05gnu: dropseq-tools: Remove reference to %build-inputs....* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Remove reference to %build-inputs by using a gexp. Ricardo Wurmus
2021-12-05gnu: dropseq-tools: Remove trailing #T....* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Remove trailing #T from build phases... [source]: ...and from the snippet. Ricardo Wurmus
2021-12-05gnu: tbb: Update to 2021.4.0....* gnu/packages/tbb.scm (tbb): Update to 2021.4.0. Marius Bakke
2021-12-05gnu: Adjust for python-build-system behavior change....Commit cb72f9a773e0931ee3758c851d96007ded034e4c changed the semantics of SITE-PACKAGES, but did not adjust all callers. * gnu/packages/bioinformatics.scm (python-pyvcf)[arguments]: Adjust for missing trailing slash. * gnu/packages/maths.scm (nomad-optimizer)[arguments]: Likewise. * gnu/packages/patchutils.scm (patchwork)[arguments]: Likewise. Marius Bakke
2021-12-05gnu: python-pyvcf: Fix bytecode compilation....* gnu/packages/bioinformatics.scm (python-pyvcf)[arguments]: Add phase to patch sample script. Marius Bakke
2021-12-05gnu: python-whisper: Update to 1.1.8....* gnu/packages/monitoring.scm (python-whisper): Update to 1.1.8. Marius Bakke
2021-12-05gnu: python-mailman-hyperkitty: Update to 1.2.0....* gnu/packages/mail.scm (python-mailman-hyperkitty): Update to 1.2.0. [source](patches): Remove. Marius Bakke
2021-12-05gnu: python-hyperkitty: Update to 1.3.5....* gnu/packages/mail.scm (python-hyperkitty): Update to 1.3.5. [arguments]: Add pythonpath in test invokation. [propagated-inputs]: Add PYTHON-MISTUNE-NEXT. Change from PYTHON-DJANGO-2.2 to PYTHON-DJANGO. [native-inputs]: Add PYTHON-LXML. Marius Bakke
2021-12-05gnu: Add python-mistune-next....* gnu/packages/python-xyz.scm (python-mistune-next): New variable. Marius Bakke
2021-12-05gnu: python-django-haystack: Update to 3.1.1....* gnu/packages/django.scm (python-django-haystack): Update to 3.1.1. [arguments]: Adjust substitution. Marius Bakke
2021-12-05gnu: python-alembic: Update to 1.7.5....* gnu/packages/databases.scm (python-alembic): Update to 1.7.5. [propagated-inputs]: Remove PYTHON-IMPORTLIB-RESOURCES. Marius Bakke
2021-12-05gnu: ganeti: Add the output directory on GUIX_PYTHONPATH....This is a follow-up to commit 1ed567c8721ec2810fdb70f1c6fc8396a705d503. * gnu/packages/virtualization.scm (ganeti)[arguments]: Adjust wrap phase to include Ganetis own site-packages on $GUIX_PYTHONPATH. Marius Bakke
2021-12-05gnu: python-webassets: Patch for Python 3.9....* gnu/packages/python-web.scm (python-webassets)[arguments]: Add substitution. Marius Bakke
2021-12-05gnu: python-django-mailman3: Update to 1.3.7....* gnu/packages/mail.scm (python-django-mailman3): Update to 1.3.7. Marius Bakke
2021-12-05gnu: python-mailmanclient: Update to 3.3.3....* gnu/packages/mail.scm (python-mailmanclient): Update to 3.3.3. Marius Bakke
2021-12-05gnu: python-django-url-filter: Adjust phase order....* gnu/packages/django.scm (python-django-url-filter)[arguments]: Move substitution to after the unpack phase, so that it does not end up in the egg info. Marius Bakke
2021-12-05gnu: python-django-netfields: Propagate psycopg2....* gnu/packages/django.scm (python-django-netfields)[propagated-inputs]: Add PYTHON-PSYCOPG2. Marius Bakke
2021-12-05gnu: python-django-logging-json: Disable sanity check....* gnu/packages/django.scm (python-django-logging-json)[arguments]: Add #:phases. Marius Bakke
2021-12-05gnu: python-django-appconf: Fix tests....* gnu/packages/django.scm (python-django-appconf): Invoke django-admin with custom pythonpath. Marius Bakke
2021-12-05gnu: python-django-pipeline: Fix tests....* gnu/packages/django.scm (python-django-pipeline): Provide pythonpath to django-admin. Marius Bakke
2021-12-05gnu: python-django-sortedm2m: Fix tests....This is a follow-up to commit 283d5ac97f2f7663b788bd2fc3b9a27a3d82c7d5. * gnu/packages/django.scm (python-django-sortedm2m): Invoke django-admin with pythonpath and test settings. Marius Bakke
2021-12-05gnu: python-django-contact-form: Update to 1.9....* gnu/packages/django.scm (python-django-contact-form): Update to 1.9. Marius Bakke
2021-12-05gnu: python-django-jinja: Update to 2.9.1....* gnu/packages/django.scm (python-django-jinja): Update to 2.9.1. Marius Bakke
2021-12-05gnu: python-django-haystack: Disable sanity check....* gnu/packages/django.scm (python-django-haystack)[arguments]: Delete one phase. While at it, remove trailing #t's. Marius Bakke
2021-12-05gnu: python-fakeredis: Update to 1.7.0....* gnu/packages/databases.scm (python-fakeredis): Update to 1.7.0. Marius Bakke
2021-12-05gnu: Django packages propagate Django, after all....This reverts commit d7922f488b658b1adb5aff09f04a9bed0221aee1. Mainly to placate the new 'sanity-check' phase, and because --with-input and friends makes it easy to override. * gnu/packages/django.scm (python-django-extensions, python-django-simple-math-captcha, python-django-taggit, python-easy-thumbnails, python-django-haystack, python-django-allauth, python-django-debug-toolbar, python-django-debug-toolbar-alchemy, python-django-assets, python-django-jinja, python-django-picklefield, python-django-bulk-update, python-django-contact-form, python-django-contrib-comments, python-django-pipeline, python-django-redis, python-django-rq, python-django-q, python-django-sortedm2m, python-django-appconf, python-django-statici18n, python-djangorestframework, python-django-sekizai, python-django-crispy-forms, python-django-override-storage, python-django-auth-ldap, python-django-logging-json, python-django-netfields, python-django-url-filter)[propagated-inputs]: Add PYTHON-DJANGO. [native-inputs]: Remove it. Marius Bakke
2021-12-05gnu: evolution: Build with libsoup 2....* gnu/packages/gnome.scm (evolution) [phase adjust-webkitgtk-version]: Remove it. [inputs]: Depend on webkitgtk-with-libsoup2 instead of webkitgtk. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Vivien Kraus
2021-12-05gnu: tla2tools: Remove reference to %output....* gnu/packages/java.scm (tla2tools)[arguments]: Bind OUTPUTS in build phase 'install to remove reference to %output. Ricardo Wurmus
2021-12-05gnu: java-log4j-core: Remove reference to %outputs....* gnu/packages/java.scm (java-log4j-core)[arguments]: Remove reference to %outputs by using a gexp. Ricardo Wurmus
2021-12-05gnu: java-log4j-api: Remove reference to %outputs....* gnu/packages/java.scm (java-log4j-api)[arguments]: Remove reference to %outputs by using a gexp. Ricardo Wurmus
2021-12-05gnu: java-native-access: Use older GCC....* gnu/packages/java.scm (java-native-access)[native-inputs]: Add gcc-7 to fix the build. Ricardo Wurmus
2021-12-05gnu: java-commons-math3: Remove trailing #T....* gnu/packages/java.scm (java-commons-math3)[arguments]: Remove trailing #T from build phase. Ricardo Wurmus
2021-12-05gnu: salmon: Remove reference to %build-inputs....* gnu/packages/bioinformatics.scm (salmon)[arguments]: Use a gexp to remove reference to %build-inputs. Ricardo Wurmus
2021-12-04gnu: libhandy: Skip test that requires librsvg on non-x86_64....* gnu/packages/gnome.scm (libhandy)[arguments]: Add 'skip-test-that-requires-svg' phase on non-x86_64. Ludovic Courtès
2021-12-04gnu: gtranslator: Update to 40.0....* gnu/packages/gnome.scm (gtranslator): Update to 40.0. [inputs]: Add LIBHANDY. Ludovic Courtès
2021-12-04gnu: gtranslator: Fix compilation....* gnu/packages/gnome.scm (gtranslator)[inputs]: Replace LIBSOUP with LIBSOUP-MINIMAL-2. [arguments]: Pass #:meson. Ludovic Courtès
2021-12-04gnu: libgda: Do not use the bundled sqlite....* gnu/packages/gnome.scm (libgda)[source]: Add snippet. [arguments]: Pass "--enable-system-sqlite". [inputs]: Add SQLITE. Ludovic Courtès
2021-12-04gnu: java-commons-math3: Remove references to %build-inputs....* gnu/packages/java.scm (java-commons-math3)[arguments]: Use a gexp to remove references to %build-inputs. Julien Lepiller
2021-12-04gnu: java-commons-collections4: Remove references to %build-inputs....* gnu/packages/java.scm (java-commons-collections4)[arguments]: Use a gexp to remove references to %build-inputs. Julien Lepiller
2021-12-04gnu: java-commons-exec-1.1: Remove references to %build-inputs....* gnu/packages/java.scm (java-commons-exec-1.1)[arguments]: Use a gexp to remove references to %build-inputs. Julien Lepiller
2021-12-04gnu: java-commons-exec: Remove references to %build-inputs....* gnu/packages/java.scm (java-commons-exec)[arguments]: Use a gexp to remove references to %build-inputs. Julien Lepiller
2021-12-04gnu: maven-components-parent-pom-22: Remove references to %build-inputs....* gnu/packages/maven-parent-pom.scm (maven-components-parent-pom-22) [arguments]: Use a gexp to remove references to %build-inputs. Julien Lepiller
2021-12-04gnu: java-sonatype-oss-parent-pom-9: Remove references to %build-inputs....* gnu/packages/maven-parent-pom.scm (java-sonatype-oss-parent-pom-9) [arguments]: Use a gexp to remove references to %build-inputs. Julien Lepiller
2021-12-04gnu: sailfish: Remove references to %build-inputs....* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use a gexp to remove references to %build-inputs. Ricardo Wurmus