| Age | Commit message (Expand) | Author |
|---|
| 2022-12-13 | gnu: Add cl-uax-14....* gnu/packages/lisp-xyz.scm (cl-uax-14, ecl-uax-14, sbcl-uax-14): New variables.
| Pierre Neidhardt |
| 2022-12-13 | gnu: Add cl-font-discovery....* gnu/packages/lisp-xyz.scm (cl-font-discovery, ecl-font-discovery,
sbcl-font-discovery): New variables.
| Pierre Neidhardt |
| 2022-12-13 | gnu: Add cl-colored....* gnu/packages/lisp-xyz.scm (cl-colored, ecl-colored, sbcl-colored): New variables.
| Pierre Neidhardt |
| 2022-12-13 | gnu: mympd: Update to 10.1.6....* gnu/packages/mpd.scm (mympd): Update to 10.1.6.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
| Bruno Victal |
| 2022-12-13 | gnu: gauche: Update to 0.9.12...* gnu/packages/scheme.scm (gauche): Update to 0.9.12.
[source]: Project migrated to GitHub.
libatomic-ops is no longer in the Gauche source tree.
[arguments]: Renamed network test file.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
| Robby Zambito |
| 2022-12-13 | gnu: cnvkit: Update to 0.9.9....* gnu/packages/bioinformatics.scm (cnvkit): Update to 0.9.9.
[build-system]: Use pyproject-build-system.
[arguments]: Relax restriction on python-joblib.
[propagated-inputs]: Add python-pomegranate and python-scikit-learn.
| Ricardo Wurmus |
| 2022-12-13 | gnu: seqmagick: Update to 0.8.4....* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.4.
[build-system]: Use pyproject-build-system.
[inputs]: Add python-pygtrie.
[native-inputs]: Replace python-nose with python-pytest.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-flasgger: Update to 0.9.5....* gnu/packages/python-xyz.scm (python-flasgger): Update to 0.9.5.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add 'prepare-check phase; disable
"test_swag" test via #:test-flags.
[native-inputs]: Add python-apispec-webframeworks and python-flask-jwt.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-pyjwt: Update to 2.6.0....* gnu/packages/python-xyz.scm (python-pyjwt): Update to 2.6.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
[native-inputs]: Add pytohn-coverage, python-pre-commit, python-sphinx, and
python-sphinx-rtd-theme.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-apispec: Update to 6.0.2....* gnu/packages/python-xyz.scm (python-apispec): Update to 6.0.2.
[build-system]: Use pyproject-build-system.
[arguments]: Disable test through test-flags, not by replacing the 'check
phase.
[propagated-inputs]: Remove python-pyyaml; add python-packaging.
[native-inputs]: Add python-flake8, python-flake8-bugbear, python-mypy,
python-pre-commit, and python-pyyaml.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-marshmallow: Update to 3.19.0....* gnu/packages/python-xyz.scm (python-marshmallow): Update to 3.19.0.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Remove python-dateutil and python-simplejson; add
python-packaging.
[native-inputs]: Add python-flake8, python-flake8-bugbear, python-mypy,
python-pre-commit, and python-simplejson.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-flask-restful: Update to 0.3.9....* gnu/packages/python-web.scm (python-flask-restful): Update to 0.3.9.
[source]: Remove patch.
[build-system]: Use pyproject-build-system.
[arguments]: Disable "test_redirect" test; remove 'fix-imports phase.
[native-inputs]: Replace python-nose with python-pytest.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/python-flask-restful-werkzeug-compat.patch: Remove file.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-cgatcore: Update to 0.6.14....* gnu/packages/bioinformatics.scm (python-cgatcore): Update to 0.6.14.
[build-system]: Use pyproject-build-system.
[arguments]: Disable broken tests with #:test-flags; do not replace 'check
phase; add phase 'sqlite-compatibility.
[native-inputs]: Drop input labels.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-apsw: Update to 3.40.0.0....* gnu/packages/databases.scm (python-apsw): Update to 3.40.0.0.
[source]: Remove obsolete patch.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-cython.
[arguments]: Move build-extensions phase before build phase.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/python-apsw-3.39.2.1-test-fix.patch: Remove file.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-bokeh: Skip failing PIL test....The test compares base64-encoded gifs; the gifs look identical but the
base64-encoded data differs. Since the result seems fine, disabling this PIL
test is probably okay.
* gnu/packages/python-xyz.scm (python-bokeh)[arguments]: Ignore failing
test_transform_PIL test.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-dna-features-viewer: Update to 3.1.1....* gnu/packages/bioinformatics.scm (python-dna-features-viewer):
Update to 3.1.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add build phase to fix a compatibility problem with biopython.
[propagated-inputs]: Add python-packaging.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-hicexplorer: Update to 3.7.2....* gnu/packages/bioinformatics.scm (python-hicexplorer): Update to 3.7.2.
[build-system]: Use pyproject-build-system.
[arguments]: Use gexp; remove phase "loosen-up-requirements"; add test-flags
to skip some tests; add phase "remove-dependency-on-krbalancing" to remove a
dependency on an unlicensed package; add phase "fix-references"; add phase
"run-only-low-mem-tests".
[propagated-inputs]: Remove python-configparser and python-six; add
python-biopython, python-cleanlab-1, python-fit-nbinom, python-graphviz,
python-hic2cool, python-hicmatrix, python-hyperopt, python-imbalanced-learn,
python-ipykernel, python-psutil, python-pybedtools, python-pygenometracks,
python-scikit-learn, and python-tqdm.
[native-inputs]: Add graphviz.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-pygenometracks: Update to 3.5....* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.5.
[build-system]: Use pyproject-build-system.
[arguments]: Quote phases instead of full list of arguments; remove trailing #T
from build phase.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-hicmatrix: Update to 16....* gnu/packages/bioinformatics.scm (python-hicmatrix): Update to 16.
[build-system]: Use pyproject-build-system.
[arguments]: Shuffle the quote.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-biopython: Update to 1.80....* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.80.
[build-system]: Use pyproject-build-system.
[arguments]: Remove trailing #T from build phase.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-hyperopt: Update to 0.2.7....* gnu/packages/machine-learning.scm (python-hyperopt): Update to 0.2.7.
[arguments]: Adjust check phase; disable test_distribution_rvs test.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-py4j.
[native-inputs]: Remove python-ipython and python-ipyparallel.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-graphviz: Update to 0.20.1....* gnu/packages/graphviz.scm (python-graphviz): Update to 0.20.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom "check" phase; add "prepare-check" phase.
[native-inputs]: Remove python-mock.
| Ricardo Wurmus |
| 2022-12-12 | gnu: python-anndata: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-anndata)[build-system]: Use
pyproject-build-system.
[arguments]: Replace custom 'build phase with 'set-version phase; remove
custom 'install phase; disable doctest via build phase 'disable-doctests and
the #:test-flags property.
[propagated-inputs]: Add python-scikit-learn.
[native-inputs]: Add python-boltons.
| Ricardo Wurmus |
| 2022-12-12 | gnu: python-zarr: Update to 2.13.3....* gnu/packages/python-xyz.scm (python-zarr): Update to 2.13.3.
| Ricardo Wurmus |
| 2022-12-12 | gnu: python-numcodecs: Update to 0.10.2....* gnu/packages/python-xyz.scm (python-numcodecs): Update to 0.10.2.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests; add phase 'build-extensions; remove custom 'check
phase.
[propagated-inputs]: Add python-entrypoints and python-typing-extensions-next.
| Ricardo Wurmus |
| 2022-12-12 | gnu: python-typer: Simplify by using pyproject-build-system....* gnu/packages/python-xyz.scm (python-typer)[build-system]: Use
pyproject-build-system.
[arguments]: Remove extra quoting; remove custom 'build phase; remove custom
'install phase; remove custom 'check phase; add 'pre-check phase.
[synopsis]: Pull onto the same line.
[description]: Reformat.
| Ricardo Wurmus |
| 2022-12-12 | gnu: Add erlang-yamerl....* gnu/packages/erlang.scm (erlang-yamerl): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| jgart |
| 2022-12-12 | gnu: Add erlang-jsx....* gnu/packages/erlang.scm (erlang-jsx): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| jgart |
| 2022-12-12 | services: guix-build-coordinator: Fix service startup....Previously the service would keep starting more and more processes.
* gnu/services/guix.scm (guix-build-coordinator-shepherd-services): Fix how
make-forkexec-constructor is called.
| Christopher Baines |
| 2022-12-12 | gnu: re2: Update to 2022-12-01....* gnu/packages/regex.scm (re2): Update to 2022-12-01.
| Marius Bakke |
| 2022-12-12 | tests: Add system tests for each supported kernel version....* gnu/tests/base.scm (%test-basic-os): Rename to ...
(test-basic-os): ... this, and turn into procedure that takes optional KERNEL
argument.
(%test-basic-os): Use that procedure.
(%test-linux-libre-5.15, %test-linux-libre-5.10, %test-linux-libre-5.4,
%test-linux-libre-4.19, %test-linux-libre-4.14, %test-linux-libre-4.9): New
tests.
| Marius Bakke |
| 2022-12-12 | gnu: f2fs-tools: Remove obsolete phase....* gnu/packages/linux.scm (f2fs-tools)[arguments]: Remove.
(f2fs-tools-1.7)[arguments]: Add #:phases.
| Marius Bakke |
| 2022-12-12 | gnu: f2fs-tools: Update to 1.15.0....* gnu/packages/linux.scm (f2fs-tools): Update to 1.15.0.
(f2fs-tools/static)[arguments]: Add #:make-flags. Remove make-static phase.
| Marius Bakke |
| 2022-12-12 | gnu: f2fs-tools@1.7: Don't fetch autogenerated git snapshot....* gnu/packages/linux.scm (f2fs-tools-1.7)[source]: Switch to GIT-FETCH.
| Marius Bakke |
| 2022-12-12 | gnu: f2fs-tools: Don't fetch autogenerated git snapshot....* gnu/packages/linux.scm (f2fs-tools)[source]: Switch to GIT-FETCH.
| Marius Bakke |
| 2022-12-12 | gnu: f2fs-tools: Reverse inheritance relationship....* gnu/packages/linux.scm (f2fs-tools): Update to 1.14.0.
[arguments]: Remove obsolete #:configure-flags and trailing #t in phase.
[inputs]: Remove labels.
(f2fs-tools-1.7): Inherit from above; add #:configure-flags.
[inputs]: Remove labels.
| Marius Bakke |
| 2022-12-12 | gnu: ungoogled-chromium: Build with ffmpeg@4....This is a follow-up to commit 79564bf9977ebba0b31d8dc291eb039142f51f68.
* gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Change from FFMPEG
to FFFMPEG-4.
| Marius Bakke |
| 2022-12-12 | gnu: Add r-golem....* gnu/packages/cran.scm (r-golem): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-attempt....* gnu/packages/cran.scm (r-attempt): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-anytime....* gnu/packages/cran.scm (r-anytime): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-shinycustomloader....* gnu/packages/cran.scm (r-shinycustomloader): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-logging....* gnu/packages/cran.scm (r-logging): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-asics....* gnu/packages/bioconductor.scm (r-asics): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-pepsnmr....* gnu/packages/bioconductor.scm (r-pepsnmr): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-ptw....* gnu/packages/cran.scm (r-ptw): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-rcppde....* gnu/packages/cran.scm (r-rcppde): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-animalcules....* gnu/packages/bioconductor.scm (r-animalcules): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-plotroc....* gnu/packages/cran.scm (r-plotroc): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-gridsvg....* gnu/packages/cran.scm (r-gridsvg): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-gunifrac....* gnu/packages/cran.scm (r-gunifrac): New variable.
| Mădălin Ionel Patrașcu |
