| Age | Commit message (Expand) | Author |
|---|
| 2023-04-27 | gnu: vcflib: Use libwfa2.pc....* gnu/packages/bioinformatics.scm (vcflib)[source]: Use pkg-config to look for
libwfa2.
[inputs]: Move wfa2-lib from here...
[propagated-inputs]: ...to here.
[arguments]: Drop WFA_LINK_LIBRARIES option; fix typo in build phase name;
patch IntervalTree.h includes; add libwfa2 to pkg-config file.
| Ricardo Wurmus |
| 2023-04-27 | gnu: wfa2-lib: Install pkg-config file....* gnu/packages/bioinformatics.scm (wfa2-lib)[arguments]: Install libwfa2.pc.
| Ricardo Wurmus |
| 2023-04-27 | gnu: express: Adjust bamtools location....* gnu/packages/bioinformatics.scm (express)[arguments]: Modify location of
libbamtools.so in 'use-shared-boost-libs-and-set-bamtools-paths; drop trailing
#T.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-tinycss2: Simplify....* gnu/packages/python-web.scm (python-tinycss2)[build-system]: Use
pyproject-build-system.
[arguments]: Remove.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-openapi-core: Add missing input....* gnu/packages/python-web.scm (python-openapi-core)[build-system]: Use
pyproject-build-system.
[arguments]: Do not override 'check phase; specify #:test-flags.
[native-inputs]: Add python-mock.
| Ricardo Wurmus |
| 2023-04-27 | gnu: libwebsockets: Update to 4.3.2....* gnu/packages/web.scm (libwebsockets): Update to 4.3.2.
[arguments]: Remove.
[source]: Use GIT-FILE-NAME.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-google-cloud-storage: Add missing input....* gnu/packages/python-web.scm (python-google-cloud-storage)[native-inputs]:
Add python-mock.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-google-resumable-media: Add missing input....* gnu/packages/python-web.scm (python-google-resumable-media)[native-inputs]:
Add python-mock.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-aws-xray-sdk: Update to 2.12.0....* gnu/packages/python-web.scm (python-aws-xray-sdk): Update to 2.12.0.
[build-system]: Use pyproject-build-system.
[arguments]: Specify #:test-flags; do not override 'check phase; add
'pre-check phase.
[native-inputs]: Add python-httpx, python-mock, python-pytest-asyncio, and
python-pytest-benchmark.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-httpx: Update to 0.24.0....* gnu/packages/python-web.scm (python-httpx): Update to 0.24.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom check phase in favor of specifying #:test-flags.
[native-inputs]: Add python-hatchling and python-hatch-fancy-pypi-readme.
(python-httpx-bootstrap)[native-inputs]: Add python-hatchling and
python-hatch-fancy-pypi-readme.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-httpcore: Update to 0.17.0....* gnu/packages/python-web.scm (python-httpcore): Update to 0.17.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom check phase; specify #:test-flags; disable broken
tests.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-h11: Update to 0.14.0....* gnu/packages/python-web.scm (python-h11): Update to 0.14.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-wsproto: Update to 1.2.0....* gnu/packages/python-web.scm (python-wsproto): Update to 1.2.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-dendropy: Fix build....* gnu/packages/bioinformatics.scm (python-dendropy)[native-inputs]: Add
python-pytest.
[arguments]: Add phase 'python-compatibility; remove 'skip-broken-tests; add
#:test-flags; do not delete test files.
[build-system]: Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-watchgod: Update to 0.8.1....* gnu/packages/python-xyz.scm (python-watchgod): Update to 0.8.1.
[build-system]: Use pyproject-build-system.
[arguments]: Specify #:test-flags instead of overwriting 'check phase.
[native-inputs]: Add python-anyio.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-fastjsonschema: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-fastjsonschema): Reindent.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom check phase; update comment on why tests are
disabled.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-rapidjson: Update to 1.10....* gnu/packages/python-web.scm (python-rapidjson): Update to 1.10.
[source]: Simplify snippet.
[arguments]: Run tests conditionally; do not delete test files.
| Ricardo Wurmus |
| 2023-04-26 | gnu: rapidjson: Update to 1.1.0-1.949c771....* gnu/packages/patches/rapidjson-gcc-compat.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/web.scm (rapidjson): Update to 1.1.0-1.949c771.
[source]: Remove obsolete patch.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-multiprocess: Update to 0.70.14....* gnu/packages/python-xyz.scm (python-multiprocess): Update to 0.70.14.
[build-system]: Use pyproject-build-system.
[arguments]: Adjust directory containing tests; disable two more tests;
replace check phase instead of deleting and adding it; run tests
conditionally.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-dill: Update to 0.3.6....* gnu/packages/python-xyz.scm (python-dill): Update to 0.3.6.
[build-system]: Use pyproject-build-system.
[arguments]: Run tests conditionally; drop trailing #T from build phase.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-jupyterlab-widgets: Update to 1.1.4....* gnu/packages/jupyter.scm (python-jupyterlab-widgets): Update to 1.1.4.
[build-system]: Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-fire: Add missing input....* gnu/packages/python-xyz.scm (python-fire)[native-inputs]: Add python-mock.
| Ricardo Wurmus |
| 2023-04-26 | gnu: gitg: Fix build....* gnu/packages/patches/gitg-fix-positional-argument.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.
* gnu/packages/gnome.scm (gitg)[source]<patches>: Use it here.
| Liliana Marie Prikler |
| 2023-04-26 | gnu: gnome-2048: Fix build....* gnu/packages/patches/gnome-2048-fix-positional-argument.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.
* gnu/packages/games.scm (gnome-2048)[source]<patches>: Use it here.
| Liliana Marie Prikler |
| 2023-04-26 | gnu: python-umap-learn: Patch for sklearn/numpy compatibility....* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Add phase
'numpy-compatibility.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-tables: Build cython files from source....* gnu/packages/python-xyz.scm (python-tables)[source]: Remove generated C
files.
[arguments]: Remove trailing #T from build phases; use G-expression; override
library directories.
[inputs]: Add c-blosc and lzo.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-bokeh: Add missing input....* gnu/packages/python-xyz.scm (python-bokeh)[native-inputs]: Add python-mock.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-tornado: Run a lot more tests and fix collections....* gnu/packages/python-web.scm (python-tornado)[arguments]: Do run tests; add
phase 'fix-collections.
| Ricardo Wurmus |
| 2023-04-26 | gnu: nikola: Add input....* gnu/packages/python-xyz.scm (nikola)[propagated-inputs]: Add python-toml.
| Andreas Enge |
| 2023-04-26 | gnu: cl-mock: Update to 1.1.0-0.01762fd....* gnu/packages/lisp-xyz.scm (sbcl-cl-mock): Update to 1.1.0-0.01762fd.
[arguments]: Build cl-mock and cl-mock-basic systems.
[inputs]: Add sbcl-bordeaux-threads.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Sharlatan Hellseher |
| 2023-04-26 | gnu: cl-fast-ecs: Update to 0.2.2....* gnu/packages/lisp-xyz.scm (sbcl-cl-fast-ecs): Update to 0.2.2.
[native-inputs]: Add sbcl-chlorophyll, sbcl-cl-mock.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Sharlatan Hellseher |
| 2023-04-26 | gnu: Add cl-chlorophyll....* gnu/packages/lisp-xyz.scm (cl-chlorophyll, ecl-chlorophyll,
sbcl-chlorophyll): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Sharlatan Hellseher |
| 2023-04-26 | gnu: cl-nclasses: Update to 0.4.0....gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.4.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Artyom Bologov |
| 2023-04-26 | gnu: flwrap: Update to 1.3.6....* gnu/packages/radio.scm (flwrap): Update to 1.3.6.
| Guillaume Le Vaillant |
| 2023-04-26 | gnu: pdf2djvu: Update to 0.9.19....* gnu/packages/djvu.scm (pdf2djvu): Update to 0.9.19.
| Guillaume Le Vaillant |
| 2023-04-26 | gnu: xonsh: Add missing input....Xonsh vim emulation mode/environment variable does not work without this.
* gnu/packages/shell.scm (xonsh)[inputs]: Add PYTHON-PROMPT-TOOLKIT.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| jgart |
| 2023-04-26 | gnu: plocate: Update to 1.1.18....* gnu/packages/search.scm (plocate): Update to 1.1.18.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| kiasoc5 |
| 2023-04-26 | gnu: emacs-vertico: Update to 1.3....* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 1.3.
| Nicolas Goaziou |
| 2023-04-26 | gnu: Add emacs-lojban....* gnu/packages/emacs-xyz.scm (emacs-lojban): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Christine Lemmer-Webber |
| 2023-04-26 | gnu: valgrind: Update to 3.20.0....* gnu/packages/valgrind.scm (valgrind): Update to 3.20.0. Remove patch.
[arguments]<phases>: Remove trailing #t.
* gnu/packages/patches/valgrind-enable-arm.patch: Delete file.
* gnu/packages/valgrind.scm (dist_patch_DATA): Unregister patch.
Signed-off-by: Andreas Enge <andreas@enge.fr>
| zimoun |
| 2023-04-26 | gnu: lz4: Remove valgrind from native-inputs....* gnu/compression.scm (lz4)[native-inputs]: Remove valgrind.
[arguments]<phases>: Remove trailing #t.
Signed-off-by: Andreas Enge <andreas@enge.fr>
| zimoun |
| 2023-04-26 | gnu: python-ipykernel: Fix build....* gnu/packages/python-xyz.scm (python-ipykernel)[build-system]: Use
pyproject-build-system.
[arguments]: Use pyproject-build-system modules; add build phase
'hide-zmq-deprecation-warnings.
| Ricardo Wurmus |
| 2023-04-26 | news: Add 'de' translation....* etc/news.scm: Add German translation of core-updates entry.
| Florian Pelz |
| 2023-04-26 | gnu: python-jupyter-client: Disable one test....* gnu/packages/python-xyz.scm (python-jupyter-client)[arguments]: Begrudgingly
disable one failing test, because there is no information on why it fails.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-jupyter-client-bootstrap: Hide zmq deprecation warning....* gnu/packages/python-xyz.scm (python-jupyter-client-bootstrap)[arguments]:
Add phase 'hide-zmq-deprecation-warning.
| Ricardo Wurmus |
| 2023-04-26 | gnu: python-jupyter-client-bootstrap: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-jupyter-client-bootstrap)[build-system]:
Use pyproject-build-system.
| Ricardo Wurmus |
| 2023-04-26 | news: Add entry for 'core-updates' merge....* etc/news.scm: Add entry.
| Ludovic Courtès |
| 2023-04-26 | gnu: python-distributed: Fix build....* gnu/packages/python-science.scm (python-distributed)[build-system]: Use
pyproject-build-system.
[arguments]: Hide deprecation warnings from tornado, because they break almost
all tests; disable three more tests.
| Ricardo Wurmus |
| 2023-04-26 | gnu: cppcheck: Update to 2.10.3....* gnu/packages/check.scm (cppcheck): Update to 2.10.3.
[home-page]: Update to new home-page.
| Efraim Flashner |
| 2023-04-26 | gnu: cppcheck: Skip failing test....* gnu/packages/patches/check.scm (cppcheck)[source]: Add patch.
* gnu/packages/patches/cppcheck-disable-char-signedness-test.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.
| Efraim Flashner |
