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2019-10-18gnu: r-r-rsp: Update to 0.43.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.2.
2019-10-18gnu: r-rcpparmadillo: Update to 0.9.800.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.800.1.0.
2019-10-18gnu: r-gdtools: Update to 0.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.1.
2019-10-18gnu: r-kernsmooth: Update to 2.23-16.Ricardo Wurmus
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-16. [inputs]: Move gfortran from here... [native-inputs]: ...to here.
2019-10-18gnu: r-styler: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-styler): Update to 1.2.0.
2019-10-18gnu: r-classint: Update to 0.4-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-classint): Update to 0.4-2.
2019-10-18gnu: r-units: Update to 0.6-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-units): Update to 0.6-5.
2019-10-18gnu: r-strucchange: Update to 1.5-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-strucchange): Update to 1.5-2.
2019-10-18gnu: r-biocmanager: Update to 1.30.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.8.
2019-10-18gnu: r-insight: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.6.0.
2019-10-18gnu: r-stringdist: Update to 0.9.5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.3.
2019-10-18gnu: r-htmlwidgets: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.1.
2019-10-18gnu: r-rhdf5lib: Update to 1.6.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.3.
2019-10-18gnu: r-hdf5array: Update to 1.12.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.3.
2019-10-18gnu: r-gwascat: Update to 2.16.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.1.
2019-10-18gnu: r-ldblock: Update to 1.14.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.3.
2019-10-18gnu: r-ensembldb: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.8.1.
2019-10-18gnu: r-keggrest: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.24.1.
2019-10-18gnu: r-rhdf5: Update to 2.28.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.28.1.
2019-10-18gnu: r-rhtslib: Update to 1.16.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.3.
2019-10-18gnu: r-mlinterfaces: Update to 1.64.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.1.
2019-10-18gnu: r-rsamtools: Update to 2.0.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.3.
2019-10-18gnu: bowtie1: Update to 1.2.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.2.3.
2019-10-18gnu: guix-data-service: Update to 0.0.1-4.5e2bc7c.Christopher Baines
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-4.5e2bc7c.
2019-10-18gnu: kwindowsystem: Fix test failure with Qt 5.12.Marius Bakke
* gnu/packages/patches/kwindowsystem-qt-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/kde-frameworks.scm (kwindowsystem)[source](patches): New field. [inputs]: Add XCB-UTIL-WM.
2019-10-18gnu: rust@1.27: Add comment about GDB requirement.Marius Bakke
This is a follow-up to commit 47dda6e01e51478567e013e3814aaf48143abbc3. * gnu/packages/rust.scm (rust-1.27)[native-inputs]: Add comment.
2019-10-18gnu: rust: Use GDB 8.2 for tests.Marius Bakke
* gnu/packages/gdb.scm (gdb-8.2): New public variable. * gnu/packages/rust.scm (rust-1.27)[native-inputs]: Use GDB-8.2 instead of GDB.
2019-10-18gnu: looking-glass-client: Adjust for Mesa 19.2.Marius Bakke
* gnu/packages/virtualization.scm (looking-glass-client)[arguments]: Add phase 'add-missing-include'.
2019-10-18Merge branch 'master' into stagingMarius Bakke
2019-10-18gnu: Add httpie.Tanguy Le Carrour
* gnu/packages/python-web.scm (httpie): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-10-18gnu: upx: Fix UCL input.Marius Bakke
UCL is a runtime dependency, and thus should not be a native input. * gnu/packages/compression.scm (upx)[native-inputs]: Move UCL from here ... [inputs]: ... to here.
2019-10-18gnu: ucl: Build shared library instead of static.Marius Bakke
* gnu/packages/compression.scm (ucl)[arguments]: Add "--enable-shared" and "--disable-static" in #:configure-flags.
2019-10-18gnu: ucl: Update home page.Marius Bakke
* gnu/packages/compression.scm (ucl)[source, home-page]: Use HTTPS.
2019-10-18gnu: ucl: Build with the C90 standard.Marius Bakke
Fixes <https://bugs.gnu.org/37778>. Reported by Pierre Neidhardt <mail@ambrevar.xyz>. * gnu/packages/compression.scm (ucl)[arguments]: New field.
2019-10-18gnu: encfs: Fix build failure with GCC 7.Marius Bakke
Fixes <https://bugs.gnu.org/37779>. Reported by Pierre Neidhardt <mail@ambrevar.xyz>. * gnu/packages/crypto.scm (encfs)[arguments]: Add phase 'patch-CMakeLists.txt'.
2019-10-18gnu: libwacom: Do not build static libraries.Marius Bakke
* gnu/packages/xdisorg.scm (libwacom)[arguments]: New field.
2019-10-18gnu: libwacom: Update to 1.1.Marius Bakke
* gnu/packages/xdisorg.scm (libwacom): Update to 1.1.
2019-10-18gnu: looking-glass-client: Disable CPU-specific optimizations.Marius Bakke
* gnu/packages/virtualization.scm (looking-glass-client)[source](modules, snippet): New fields.
2019-10-18gnu: opensubdiv: Use a regular versioning pattern.Marius Bakke
* gnu/packages/graphics.scm (opensubdiv)[version]: Use dots instead of underscores between numbers. [source](uri): Adjust accordingly.
2019-10-18gnu: linux-libre@5.2: Remove.Mark H Weaver
The 5.2 release series has reached end-of-life, and is no longer supported upstream. * gnu/packages/linux.scm (deblob-scripts-5.2, linux-libre-5.2-version) (linux-libre-5.2-pristine-source, linux-libre-5.2-source) (linux-libre-headers-5.2, linux-libre-5.2): Remove variables.
2019-10-18gnu: linux-libre: Update to 5.3.7.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.7. (linux-libre-5.3-pristine-source): Update hash.
2019-10-18gnu: linux-libre@4.19: Update to 4.19.80.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.80. (linux-libre-4.19-pristine-source): Update hash.
2019-10-18gnu: linux-libre@4.14: Update to 4.14.150.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.150. (linux-libre-4.14-pristine-source): Update hash.
2019-10-18gnu: linux-libre@4.9: Update to 4.9.197.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.197. (linux-libre-4.9-pristine-source): Update hash.
2019-10-18gnu: linux-libre@4.4: Update to 4.4.197.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.197. (linux-libre-4.4-pristine-source): Update hash.
2019-10-18gnu: lisp: Add most missing source package for Common Lisp libraries.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-parse-js, cl-parse-number, cl-iterate, cl-uglify, cl-cffi, cl-sqlite, cl-cffi-gtk, cl-webkit, cl-iolib, cl-ieee-floats, cl-xml, cl-reexport, cl-dexador, cl-cookie, cl-lisp-namespace, cl-trivial-cltl2, cl-introspect-environment, cl-type-i, cl-optima, cl-fare-quasiquote, cl-trivia, cl-mk-string-metrics, cl-str, cl-xmlspam): New variables.
2019-10-18news: Add CVE ID.Ludovic Courtès
* etc/news.scm: Add CVE ID for insecure permissions entry.
2019-10-18lint: Comment out 'cve' checker.Ludovic Courtès
* guix/lint.scm (%network-dependent-checkers): Comment out 'cve' checker.
2019-10-18gnu: Add batctl.Tonton
* gnu/packages/networking.scm (batctl): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-10-18gnu: Add FontManager.Boris A. Dekshteyn
* gnu/packages/fontutils.scm (fontmanager): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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