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2019-12-18gnu: Add r-reactomepa.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
2019-12-18gnu: Add r-graphite.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-graphite): New variable.
2019-12-18gnu: Add r-influencer.Ricardo Wurmus
* gnu/packages/cran.scm (r-influencer): New variable.
2019-12-18gnu: Add r-curatedtcgadata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
2019-12-18gnu: Add r-reactome-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
2019-12-18gnu: libmicrohttpd: Update to 0.9.69.Efraim Flashner
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.69.
2019-12-18gnu: cmst: Update to 2019.01.13.Efraim Flashner
* gnu/packages/connman.scm (cmst): Update to 2019.01.13.
2019-12-18gnu: python-ecdsa: Actually run the test suite.Efraim Flashner
* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: Replace 'check phase. [native-inputs]: Add python-pytest.
2019-12-18gnu: python-ecdsa: Update to 0.14.1.Efraim Flashner
* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.14.1. [inputs]: Move openssl ... [native-inputs]: ... to here. [propagated-inputs]: Add python-six.
2019-12-17swh: Fix API call for getting origin.Björn Höfling
When using the archival linter, git origins already in the archive where not recognized due to an API change and where repeatedly asked for archival. This is fixed here. * guix/swh.scm (lookup-origin): Fix API URI for getting origin. (<origin>): Fix comment with API URI example.
2019-12-17gnu: linux-libre: Update to 5.3.17.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.17. (linux-libre-5.3-pristine-source): Update hash.
2019-12-17gnu: linux-libre@4.19: Update to 4.19.90.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.90. (linux-libre-4.19-pristine-source): Update hash.
2019-12-17gnu: linux-libre@4.14: Update to 4.14.159.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.159. (linux-libre-4.14-pristine-source): Update hash.
2019-12-17gnu: Add r-biobroom.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
2019-12-17gnu: Add r-bioassayr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
2019-12-17gnu: Add r-chemminer.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
2019-12-17gnu: Add r-bigpint.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
2019-12-17gnu: Add r-bigmemoryextras.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
2019-12-17gnu: Add r-biggr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biggr): New variable.
2019-12-17gnu: Add r-hyperdraw.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
2019-12-17gnu: Add r-hypergraph.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
2019-12-17gnu: Add r-rsbml.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
2019-12-17gnu: Add r-bifet.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bifet): New variable.
2019-12-17gnu: Add r-bicare.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bicare): New variable.
2019-12-17gnu: Add r-bhc.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bhc): New variable.
2019-12-17gnu: Add r-bgx.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgx): New variable.
2019-12-17gnu: Add r-bgmix.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
2019-12-17gnu: Add r-rsvg.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsvg): New variable.
2019-12-17gnu: Add r-shinycssloaders.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinycssloaders): New variable.
2019-12-17gnu: Add r-lim.Ricardo Wurmus
* gnu/packages/cran.scm (r-lim): New variable.
2019-12-17gnu: Add r-diagram.Ricardo Wurmus
* gnu/packages/cran.scm (r-diagram): New variable.
2019-12-17gnu: Add r-poibin.Ricardo Wurmus
* gnu/packages/cran.scm (r-poibin): New variable.
2019-12-17gnu: Add libsbml.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (libsbml): New variable.
2019-12-17gnu: Add love-nuklear.Jethro Cao
* gnu/packages/game-development.scm (love-nuklear): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-17gnu: txr: Update to 229.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr): Update to 229. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-17gnu: gfortran: change to a hidden packageKonrad Hinsen
* gnu/packages/gcc.scm (gfortran-4.8, gfortran-4.9) (gfortran-5, gfortran-6, gfortran-7, gfortran-8) (gfortran-9): Wrap in 'hidden-package'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-17gnu: python-elasticsearch: Update to 7.1.0.Ludovic Courtès
* gnu/packages/python-web.scm (python-elasticsearch): Update to 7.1.0.
2019-12-17gnu: r-pracma: Update to 2.2.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-pracma): Update to 2.2.9.
2019-12-17gnu: r-repr: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-repr): Update to 1.0.2.
2019-12-17gnu: r-ggeffects: Update to 0.14.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.0. [propagated-inputs]: Remove r-dplyr and r-rlang.
2019-12-17gnu: r-dvmisc: Update to 1.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-dvmisc): Update to 1.1.4. [propagated-inputs]: Add r-tab; remove r-purrr.
2019-12-17gnu: r-ttr: Update to 0.23-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-ttr): Update to 0.23-6.
2019-12-17gnu: r-argparser: Update to 0.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-argparser): Update to 0.6.
2019-12-17gnu: r-ordinal: Update to 2019.12-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-ordinal): Update to 2019.12-10.
2019-12-17gnu: r-seurat: Update to 3.1.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.2.
2019-12-17gnu: r-bh: Update to 1.72.0-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bh): Update to 1.72.0-1.
2019-12-17gnu: Add r-tab.Ricardo Wurmus
* gnu/packages/cran.scm (r-tab): New variable.
2019-12-17gnu: Add r-gee.Ricardo Wurmus
* gnu/packages/cran.scm (r-gee): New variable.
2019-12-17gnu: shotwell: Clean-up inputs.Efraim Flashner
* gnu/packages/gnome.scm (shotwell)[arguments]: Add phase to skip gtk-update-icon-cache. [inputs]: Sort alphabetically. Move glib:bin ... [native-inputs]: ... to here. Remove desktop-file-utils, gtk+:bin.
2019-12-17gnu: dia: Fix version number.Efraim Flashner
This commit is actually after to 0.97.3 release. * gnu/packages/gnome.scm (dia)[version]: Use git-version. [source]: Update to new source uri. Use git-file-name.
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