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-rw-r--r--gnu/packages/bioinformatics.scm6
1 files changed, 6 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 58666cd666..fb4d93769e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12736,6 +12736,12 @@ fasta subsequences.")
(substitute* '("requirements.txt"
"cooler.egg-info/requires.txt")
(("cytoolz.*<.*0.11") "cytoolz"))))
+ ;; This version of flake8 just won't work with this version of
+ ;; pytest, because of dependency pinning.
+ (add-after 'unpack 'do-not-use-flake8
+ (lambda _
+ (substitute* "setup.cfg"
+ (("addopts = --flake8") "addopts = "))))
(add-after 'unpack 'patch-tests
(lambda _
(substitute* "tests/test_create.py"
ut locales....Ludovic Courtès 2020-08-29build: Remove references to the 'nix-hash' program....Ludovic Courtès 2020-08-29build: Remove check for Guile 2.2.1 bug....Ludovic Courtès 2020-08-24Use "guile-zlib" and "guile-lzlib" instead of (guix config)....Mathieu Othacehe 2020-06-16etc: Add committer script....Ricardo Wurmus 2020-05-28maint: Check whether Guile-Gcrypt is recent enough....Ludovic Courtès 2020-05-14etc: indent-code.el: Use the --quick option....Maxim Cournoyer 2020-04-23build: Don't build man pages when cross-compiling....Ludovic Courtès 2020-03-11build: Require Guile 2.2.3 or later....Ludovic Courtès 2020-01-17build: Allow builds with Guile 3.0....Ludovic Courtès 2019-11-09build: Warn about etc/indent-code.el when Emacs is absent....zimoun 2019-07-25maint: Switch to Guile-JSON 3.x....Ludovic Courtès 2019-05-06Add (guix lzlib)....Pierre Neidhardt 2019-04-17build: No longer substitute 'LIBGCRYPT'....Ludovic Courtès 2019-01-17configure: Disable installer build by default....Mathieu Othacehe 2019-01-17gnu: Add graphical installer support....Mathieu Othacehe 2019-01-09build: Require Guile 2.2....Ludovic Courtès 2018-12-02Make Guile-JSON a required dependency....Eric Bavier 2018-10-12build: Fine-tune the forbidden M4 patterns....Ludovic Courtès 2018-10-12build: Remove obsolete reference to 'GUIX_ASSERT_LIBGCRYPT_USABLE'....Ludovic Courtès 2018-09-04Switch to Guile-Gcrypt....Ludovic Courtès 2018-06-18build: Remove checks for 'nix-instantiate'....Ludovic Courtès 2018-06-14build: Require Guile-SQLite3....Ludovic Courtès 2018-06-01build: Check for Guile-SQLite3....Ludovic Courtès 2018-04-19gnu: doc: Allow documentation to be translated....Julien Lepiller 2018-02-26build: Require Guile >= 2.0.13....Ludovic Courtès 2018-02-07etc: Add SELinux policy for the daemon....Ricardo Wurmus 2018-01-23build: Expand ‘scripts/guix’ at Make time....Mathieu Lirzin 2018-01-16etc: Add completions for fish....ng0 2018-01-06build: Detect broken 'equal?' in Guile 2.2.1....Ludovic Courtès 2017-10-09build: Update automake version requirement to 1.14....Eric Bavier 2017-09-05build: Negate ‘--disable-daemon’ help string....Tobias Geerinckx-Rice 2017-08-02build: Make Guile-Git a hard requirement....Ludovic Courtès 2017-06-30build: Remove check for broken (srfi srfi-37)....Ludovic Courtès 2017-06-09guix: git: Add new module....Mathieu Othacehe