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-rw-r--r--gnu/packages/statistics.scm4
1 files changed, 2 insertions, 2 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index ff917d5bed..ad4f4dc36c 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3497,13 +3497,13 @@ t-probabilities, quantiles, random deviates and densities.")
(define-public r-matrixstats
(package
(name "r-matrixstats")
- (version "0.52.2")
+ (version "0.53.1")
(source (origin
(method url-fetch)
(uri (cran-uri "matrixStats" version))
(sha256
(base32
- "19fjf19cr0p3j9pj17myz39zpi5bh7ci72db3la9my09n6k6mnir"))))
+ "0bkiz5fm09d3512mfr2ymj9qsb1b8aic5l5m6fkaf5j7nsgvqw6z"))))
(properties `((upstream-name . "matrixStats")))
(build-system r-build-system)
(native-inputs
generated by cgit
pp27cy7ch3dg5v0rsny8bib1zfvrza6027g2mp5f6v8pd6mli")) (patches (search-patches "gmp-arm-asm-nothumb.patch" "gmp-faulty-test.patch")))))) (define-public mpfr (package (name "mpfr") (version "4.2.1") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/mpfr/mpfr-" version ".tar.xz")) (sha256 (base32 "1cnb3y7y351qg6r7ynwsgaykm7l2a8zg2nlljs4rf9k778shfy17")))) (arguments (list #:phases (if (system-hurd?) #~(modify-phases %standard-phases (add-after 'unpack 'skip-tests (lambda _ (substitute* "tests/tsprintf.c" (("(^| )main *\\(.*" all) (string-append all "{\n exit (77);//")))))) #~%standard-phases))) (build-system gnu-build-system) (outputs '("out" "debug")) (propagated-inputs (list gmp)) ; <mpfr.h> refers to <gmp.h> (synopsis "C library for arbitrary-precision floating-point arithmetic") (description "GNU@tie{}@acronym{MPFR, Multiple Precision Floating-Point Reliably} is a C library for performing multiple-precision, floating-point computations with correct rounding.") (license lgpl3+) (home-page "https://www.mpfr.org/"))) (define-public mpc (package (name "mpc") (version "1.3.1") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/mpc/mpc-" version ".tar.gz")) (sha256 (base32 "1f2rqz0hdrrhx4y1i5f8pv6yv08a876k1dqcm9s2p26gyn928r5b")))) (build-system gnu-build-system) (outputs '("out" "debug")) (propagated-inputs (list gmp ; <mpc.h> refers to both mpfr)) (synopsis "C library for arbitrary-precision complex arithmetic") (description "GNU@tie{}@acronym{MPC, Multiple Precision Complex library} is a C library for performing arithmetic on complex numbers. It supports arbitrarily high precision and correctly rounds the results.") (license lgpl3+) (home-page "https://www.multiprecision.org/mpc/"))) (define-public mpfi ;; The last release, 1.5.4, lacks source files such as div_ext.c and others ;; (see: https://gitlab.inria.fr/mpfi/mpfi/-/issues/21721). Use the latest ;; commit until a new release is made. (let ((commit "b9825348f1e723ab0988105599b34f1f9cd5ff3e") (revision "1")) (package (name "mpfi") (version (git-version "1.5.4" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://gitlab.inria.fr/mpfi/mpfi") (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "141pa2ym1azka25bwkx2w1mf6wdcn155ncc45dr5bj5dycw2hj0m")))) (build-system gnu-build-system) (arguments (list #:configure-flags #~(list "--enable-static=no") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'chdir (lambda _ (chdir "mpfi"))) (add-after 'unpack 'disable-problematic-tests (lambda _ ;; XXX: The tdiv_ext and trec_sqrt tests ;; segfaults (not reported upstream; accounts on ;; their gitlab apparently require to be ;; manually created). (setenv "XFAIL_TESTS" "tdiv_ext trec_sqrt")))))) (native-inputs (list automake autoconf libtool texinfo)) (propagated-inputs (list gmp mpfr)) ;<mpfi.h> refers to both (home-page "https://gitlab.inria.fr/mpfi/mpfi") (synopsis "C library for arbitrary-precision interval arithmetic") (description "@acronym{MPFI, Multiple Precision Floating-point Interval} is a portable C library for arbitrary-precision interval arithmetic, with intervals represented using MPFR reliable floating-point numbers. It's based on the @acronym{GMP, GNU Multiple Precision Arithmetic} and GNU@tie{}@acronym{MPFR, Multiple Precision Floating-Point Reliably} libraries. The purpose of arbitrary-precision interval arithmetic is to get results that are both guaranteed, thanks to interval computation, and accurate, thanks to multiple-precision arithmetic.") (license lgpl2.1+)))) (define-public irram (package (name "irram") (version "2013_01") (source (origin (method url-fetch) (uri (string-append "http://irram.uni-trier.de/irram-files/iRRAM_" version ".tar.bz2")) (sha256 (base32 "1cdmvb4hsa161rfdjqyhd9sb3fcr43p3a6nsj7cb4kn9f94qmjpj")))) (build-system gnu-build-system) (propagated-inputs (list gmp ; <mpfi.h> refers to both mpfr)) (arguments `(#:parallel-build? #f)) (synopsis "C++ package for real arithmetic based on the Real-RAM concept") (description "@dfn{iRRAM} is a C++ package for error-free real arithmetic based on the concept of a Real-RAM. Its capabilities range from ordinary arithmetic over trigonometric functions to linear algebra and differential equations. A program using iRRAM is coded in ordinary C++, but may use a special class that behaves like real numbers without any error. Additionally, iRRAM uses the concept of multi-valued functions.") (license lgpl2.0+) (home-page "http://irram.uni-trier.de/"))) (define-public qd (package (name "qd") (version "2.3.24") (source (origin (method url-fetch) (uri (string-append "https://crd-legacy.lbl.gov/~dhbailey/mpdist/qd-" version ".tar.gz")) (sha256 (base32 "0f0fwsyh23p5zfyrj6n16q7b56g213fnhdc8dbl22r3fz1rnqyx4")))) (build-system gnu-build-system) (native-inputs (list automake autoconf gfortran)) (arguments (list #:configure-flags #~(list "--disable-enable_fma" ;weird :/ "--disable-static" "--enable-shared" #$@(if (target-aarch64?) ;; XXX: The qd_test test fails numerical ;; accuracy checks for 'dd_real::exp()' on ;; aarch64 with GCC 5.4 at -O2. Disabling ;; expensive optimizations lets it pass. '("CXXFLAGS=-O3 -fno-expensive-optimizations") '("CXXFLAGS=-O3"))))) (home-page "https://www.davidhbailey.com/dhbsoftware/") (synopsis "Double-double and quad-double library") (description "This package supports both a double-double datatype (approx. 32 decimal digits) and a quad-double datatype (approx. 64 decimal digits). The computational library is written in C++. Both C++ and Fortran-90 high-level language interfaces are provided to permit one to convert an existing C++ or Fortran-90 program to use the library with only minor changes to the source code. In most cases only a few type statements and (for Fortran-90 programs) read/write statements need to be changed. PSLQ and numerical quadrature programs are included.") (license bsd-3))) (define-public cln (package (name "cln") (version "1.3.6") (source (origin (method url-fetch) (uri (string-append "https://www.ginac.de/CLN/cln-" version ".tar.bz2")) (sha256 (base32 "0jlq9l4hphk7qqlgqj9ihjp4m3rwjbhk6q4v00lsbgbri07574pl")))) (build-system gnu-build-system) (arguments `(#:configure-flags (list "--disable-static"))) (inputs (list gmp)) (home-page "https://www.ginac.de/CLN/") (synopsis "Library for arbitrary precision computations") (description "CLN is a C++ library for efficient computations with all kinds of numbers in arbitrary precision. It provides a rich set of number classes and elementary, logical and transcendental functions.") (license gpl2+))) (define-public tomsfastmath (package (name "tomsfastmath") (version "0.13.1") (synopsis "Large integer arithmetic library") (source (origin (method url-fetch) (uri (string-append "https://github.com/libtom/tomsfastmath/" "releases/download/v" version "/" "tfm-" version ".tar.xz")) (sha256 (base32 "0f0pmiaskh89sp0q933pafxb914shpaj5ad8sb5rzk1wv8d7mja7")))) (build-system gnu-build-system) (native-inputs (list libtool)) (arguments `(#:make-flags (list "-f" "makefile.shared" (string-append "LIBPATH=" %output "/lib") (string-append "INCPATH=" %output "/include") "GROUP=root" "USER=root" "CC=gcc") #:phases (modify-phases %standard-phases (delete 'configure) ; no configuration (replace 'check (lambda* (#:key make-flags #:allow-other-keys) (apply invoke "make" "stest" "test_standalone" make-flags) (invoke "./stest") (invoke "./test"))) (add-before 'install 'install-nogroup (lambda _ ;; Let permissions inherit from the current process. (substitute* "makefile.shared" (("-g \\$\\(GROUP\\) -o \\$\\(USER\\)") "")) #t)) (add-after 'install 'install-doc (lambda* (#:key outputs #:allow-other-keys) (let ((docdir (string-append (assoc-ref outputs "out") "/share/doc/tomsfastmath"))) (install-file "doc/tfm.pdf" docdir) #t))) (add-after 'install 'install-pc (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (pc-dir (string-append out "/lib/pkgconfig"))) (call-with-output-file "tomsfastmath.pc" (lambda (port) (format port "~ Name: TomsFastMath Description: ~a Version: ~a Libs: -L~a/lib -ltfm~%" ,synopsis ,version out))) (install-file "tomsfastmath.pc" pc-dir) #t)))))) (home-page "https://www.libtom.net/TomsFastMath/") (description "TomsFastMath is a large integer library written in portable ISO C. It is a port of LibTomMath with optional support for inline assembler multiplies.") (license public-domain))) (define-public libtomcrypt (package (name "libtomcrypt") (version "1.18.2") (outputs '("out" "static")) (source (origin (method url-fetch) (uri (string-append "https://github.com/libtom/libtomcrypt" "/releases/download/v" version "/crypt-" version ".tar.xz")) (sha256 (base32 "113vfrgapyv72lalhd3nkw7jnks8az0gcb5wqn9hj19nhcxlrbcn")) (modules '((guix build utils))) (snippet '(begin ;; Patch CVE-2019-17362 ;; https://github.com/libtom/libtomcrypt/commit/25c26a3b7a9ad8192ccc923e15cf62bf0108ef94 (substitute* "src/pk/asn1/der/utf8/der_decode_utf8_string.c" (("z > 4") "z == 1 || z > 4")) #t)))) (build-system gnu-build-system) (arguments `(#:phases (modify-phases %standard-phases (delete 'configure) ; no configure (add-after 'unpack 'prepare-build (lambda _ ;; We want the shared library by default so force it to be the ;; default makefile target. (delete-file "makefile") (symlink "makefile.shared" "makefile") ;; We link to libtommath, so we need to add it to the pc file (substitute* "libtomcrypt.pc.in" (("-ltomcrypt") "-ltomcrypt -ltommath")) #t)) (add-after 'build 'build-static (lambda* (#:key make-flags #:allow-other-keys) (apply invoke "make" "-f" "makefile.unix" make-flags))) (replace 'check (lambda* (#:key test-target make-flags #:allow-other-keys) (apply invoke "make" "-f" "makefile.unix" test-target make-flags) (invoke "./test"))) (add-after 'install 'install-static-library (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) (static (assoc-ref outputs "static"))) (mkdir-p (string-append static "/lib")) (mkdir-p (string-append static "/include")) (rename-file (string-append out "/lib/libtomcrypt.a") (string-append static "/lib/libtomcrypt.a")) (copy-recursively (string-append out "/include") (string-append static "/include")) #t)))) #:test-target "test" #:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out")) "CFLAGS += -DLTM_DESC -DUSE_LTM" (string-append "EXTRALIBS=" (search-input-file %build-inputs "/lib/libtommath.so")) (string-append "CC=" ,(cc-for-target))))) (native-inputs (list libtool)) (inputs (list libtommath)) (home-page "https://www.libtom.net/LibTomCrypt/") (synopsis "Cryptographic toolkit") (description "LibTomCrypt is a fairly comprehensive, modular and portable cryptographic toolkit that provides developers with a vast array of well known published block ciphers, one-way hash functions, chaining modes, pseudo-random number generators, public key cryptography and a plethora of other routines.") (properties `((lint-hidden-cve . ("CVE-2019-17362")))) (license unlicense))) (define-public libtommath (package (name "libtommath") (version "1.3.0") (outputs '("out" "static")) (source (origin (method url-fetch) (uri (string-append "https://github.com/libtom/libtommath/releases/" "download/v" version "/ltm-" version ".tar.xz")) (sha256 (base32 "024xzb66abhla7kjks07ga05id9lq007cq3kxc41769m6kcp4qi9")))) (build-system gnu-build-system) (arguments '(#:phases (modify-phases %standard-phases (delete 'configure) ; no configure (add-after 'unpack 'prepare-build (lambda _ ;; We want the shared library by default so force it to be the ;; default makefile target. (delete-file "makefile") (symlink "makefile.shared" "makefile"))) (add-after 'install 'remove-static-library (lambda* (#:key outputs #:allow-other-keys) (delete-file (string-append (assoc-ref outputs "out") "/lib/libtommath.a")))) (replace 'check (lambda* (#:key tests? test-target make-flags #:allow-other-keys) (when tests? (apply invoke "make" test-target make-flags) (invoke "sh" "test")))) (add-after 'install 'install-static-library (lambda* (#:key outputs #:allow-other-keys) (invoke "make" "-f" "makefile.unix" "install" (string-append "PREFIX=" (assoc-ref outputs "static")) (string-append "CC=" (which "gcc")))))) #:test-target "test" #:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out")) "CC=gcc"))) (native-inputs (list libtool)) (home-page "https://www.libtom.net/LibTomMath/") (synopsis "Portable number theoretic multiple-precision integer library") (description "LibTomMath is a portable number theoretic multiple-precision integer library written entirely in C. It's designed to provide an API that is simple to work with that provides fairly efficient routines that build out of the box without configuration.") (properties `((upstream-name . "ltm") (lint-hidden-cve . ("CVE-2023-36328")))) (license unlicense)))
generated by cgit