diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a2ffbd5155..070148cb76 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -22719,6 +22719,51 @@ starting from Hi-C data. Each hierarchical level is identified by a minimum value of physical insulation between neighboring domains.") (license license:gpl2+)))) +(define-public r-spacexr + (let ((commit "0a0861e3d1e16014a20e9b743d0e19d3b42231f3") + (revision "1")) + (package + (name "r-spacexr") + (version (git-version "2.2.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/dmcable/spacexr") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0hqrllzq2hi6dsr8nykn1yp7s3rcbjrv3m624b61n4nxnzza458a")))) + (properties `((upstream-name . "spacexr"))) + (build-system r-build-system) + (propagated-inputs (list r-compquadform + r-data-table + r-doparallel + r-dplyr + r-fields + r-foreach + r-ggplot2 + r-knitr + r-locfdr + r-matrix + r-metafor + r-mgcv + r-pals + r-quadprog + r-readr + r-reshape2 + r-rfast + r-rmarkdown + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/dmcable/spacexr") + (synopsis + "Cell type identification and differential expression in spatial transcriptomics") + (description + "This package is used for cell type identification in spatial transcriptomics. +It also handles cell type-specific differential expression.") + (license license:gpl3)))) + (define-public r-spectre (let ((commit "f6648ab3eb9499300d86502b5d60ec370ae9b61a") (revision "1")) |