diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 75b5566586..c062c9e803 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com> ;;; Copyright © 2021 Nicolas Vallet <nls.vallet@gmail.com> ;;; Copyright © 2023 Navid Afkhami <Navid.Afkhami@mdc-berlin.de> +;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -14505,6 +14506,30 @@ algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.") (license license:gpl2+))) +(define-public r-hmmcopy + (package + (name "r-hmmcopy") + (version "1.44.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "HMMcopy" version)) + (sha256 + (base32 "1nhm8bv6p5zcs7f9p1hqzyjgya6v3q8rl13blh135pk9gxjiad2c")))) + (properties `((upstream-name . "HMMcopy"))) + (build-system r-build-system) + (propagated-inputs (list r-data-table)) + (home-page "https://bioconductor.org/packages/HMMcopy") + (synopsis + "Copy number prediction with correction for GC and mappability bias for HTS data") + (description + "This package corrects GC and mappability biases for +readcounts (i.e. coverage) in non-overlapping windows of fixed length for +single whole genome samples, yielding a rough estimate of copy number for +further analysis. It was designed for rapid correction of high coverage whole +genome tumor and normal samples.") + (license license:gpl3))) + ;; This is a CRAN package, but it uncharacteristically depends on a ;; Bioconductor package. (define-public r-htscluster |