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-rw-r--r--gnu/packages/bioconductor.scm30
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0ded2a7b67..32391d6d4b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -197,6 +197,36 @@ default." )
genomes and gene ID formats, largely based on the UCSC table browser.")
(license license:lgpl2.0+)))
+(define-public r-txdb-mmusculus-ucsc-mm9-knowngene
+ (package
+ (name "r-txdb-mmusculus-ucsc-mm9-knowngene")
+ (version "3.2.2")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://bioconductor.org/packages/"
+ "release/data/annotation/src/contrib"
+ "/TxDb.Mmusculus.UCSC.mm9.knownGene_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"))))
+ (properties
+ `((upstream-name . "TxDb.Mmusculus.UCSC.mm9.knownGene")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-annotationdbi" ,r-annotationdbi)))
+ (home-page
+ "https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm9.knownGene/")
+ (synopsis "Annotation package for mouse genome in TxDb format")
+ (description
+ "This package provides an annotation database of Mouse genome data. It
+is derived from the UCSC mm9 genome and based on the \"knownGene\" track. The
+database is exposed as a @code{TxDb} object.")
+ (license license:artistic2.0)))
+
(define-public r-hpar
(package