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Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 387d21a404..38c309caa4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3854,6 +3854,50 @@ originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15.") (license license:lgpl3))) +(define-public r-dittoseq + (package + (name "r-dittoseq") + (version "1.8.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "dittoSeq" version)) + (sha256 + (base32 + "0vi0hcyffaxp6yxsrq95bdlrhr85dvbqm9c7rg6a6blkfgwhlzb4")))) + (properties `((upstream-name . "dittoSeq"))) + (build-system r-build-system) + (propagated-inputs + (list r-colorspace + r-cowplot + r-ggplot2 + r-ggrepel + r-ggridges + r-gridextra + r-pheatmap + r-reshape2 + r-s4vectors + r-singlecellexperiment + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/dittoSeq") + (synopsis "Single-cell and bulk RNA sequencing visualization") + (description + "This package provides a universal, user friendly, single-cell and bulk RNA +sequencing visualization toolkit that allows highly customizable creation of +color blindness friendly, publication-quality figures. dittoSeq accepts both +SingleCellExperiment (SCE) and Seurat objects, as well as the import and +usage, via conversion to an SCE, of SummarizedExperiment or DGEList bulk data. +Visualizations include dimensionality reduction plots, heatmaps, scatterplots, +percent composition or expression across groups, and more. Customizations +range from size and title adjustments to automatic generation of annotations +for heatmaps, overlay of trajectory analysis onto any dimensionality reduciton +plot, hidden data overlay upon cursor hovering via ggplotly conversion, and +many more. All with simple, discrete inputs. Color blindness friendliness is +powered by legend adjustments (enlarged keys), and by allowing the use of +shapes or letter-overlay in addition to the carefully selected +code{dittoColors()}.") + (license license:expat))) + (define-public r-edaseq (package (name "r-edaseq") |