diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/cran.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 78ca98d502..abf4e02f75 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4694,3 +4694,31 @@ Group (Non-)Overlap considerations.") @item miscellaneous other utilities. @end itemize\n") (license license:gpl2+))) + +(define-public r-refgenome + (package + (name "r-refgenome") + (version "1.7.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "refGenome" version)) + (sha256 + (base32 + "15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn")))) + (properties `((upstream-name . "refGenome"))) + (build-system r-build-system) + (propagated-inputs + `(("r-dbi" ,r-dbi) + ("r-doby" ,r-doby) + ("r-rsqlite" ,r-rsqlite))) + (home-page "https://cran.r-project.org/web/packages/refGenome/") + (synopsis + "Gene and splice site annotation using annotation data from Ensembl and UCSC") + (description + "This package contains functionality for importing and managing of +downloaded genome annotation data from the Ensembl genome browser (European +Bioinformatics Institute) and from the UCSC genome browser (University of +California, Santa Cruz) and annotation routines for genomic positions and +splice site positions.") + (license license:gpl2))) |