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-rw-r--r--gnu/packages/bioinformatics.scm7
1 files changed, 7 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 232c7db838..1bba270749 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5210,6 +5210,13 @@ against local background noises.")
(("#include \"(bam|sam|kstring).h\"" _ header)
(string-append "#include <samtools/" header ".h>")))
#t))
+ (add-after 'unpack 'remove-duplicate-typedef
+ (lambda _
+ ;; This typedef conflicts with the typedef in
+ ;; glibc-2.25/include/bits/types.h
+ (substitute* "gclib/GThreads.h"
+ (("typedef long long __intmax_t;") ""))
+ #t))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))