diff options
Diffstat (limited to 'gnu/packages/python-science.scm')
| -rw-r--r-- | gnu/packages/python-science.scm | 47 |
1 files changed, 30 insertions, 17 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 13ee6b3df6..eb1f8312cd 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -186,7 +186,16 @@ routines such as routines for numerical integration and optimization.") (uri (pypi-uri "scipy" version)) (sha256 (base32 - "1cgvgin8fvckv96hjh3ikmwkra5rif51bdb75ifzf7xbil5iwcx4")))))) + "1cgvgin8fvckv96hjh3ikmwkra5rif51bdb75ifzf7xbil5iwcx4")))) + (native-inputs + `(("python-cython" ,python2-cython) + ("python-pytest" ,python2-pytest) + ("python-sphinx" ,python2-sphinx) + ("python-numpydoc" ,python2-numpydoc) + ("gfortran" ,gfortran-7) + ("gcc" ,gcc-7) + ("perl" ,perl) + ("which" ,which))))) (define-public python2-weave (package @@ -331,13 +340,13 @@ of the SGP4 satellite tracking algorithm.") (define-public python-pandas (package (name "python-pandas") - (version "1.3.3") + (version "1.3.4") (source (origin (method url-fetch) (uri (pypi-uri "pandas" version)) (sha256 - (base32 "1pq1nwj2kysy2g3p18wjb1xn8vk1jhcyisxilsnkwyd99aqqqb17")))) + (base32 "1z3gm521wpm3j13rwhlb4f2x0645zvxkgxij37i3imdpy39iiam2")))) (build-system python-build-system) (arguments `(#:modules ((guix build utils) @@ -360,26 +369,30 @@ of the SGP4 satellite tracking algorithm.") ;; xsel needs to write a log file. (setenv "HOME" "/tmp"))) (replace 'check - (lambda _ + (lambda* (#:key tests? #:allow-other-keys) (let ((build-directory (string-append (getcwd) "/build/" (first (scandir "build" (cut string-prefix? "lib." <>)))))) + (substitute* "pyproject.toml" + ;; Not all data files are distributed with the tarball. + (("--strict-data-files ") "")) (with-directory-excursion build-directory - (invoke "pytest" "-vv" "pandas" "--skip-slow" - "--skip-network" - "-k" - ;; These tets access the internet: - ;; pandas/tests/io/xml/test_xml.py::test_wrong_url[lxml] - ;; pandas/tests/io/xml/test_xml.py::test_wrong_url[etree] - ;; TODO: the excel tests fail for unknown reasons - (string-append "not test_wrong_url" - " and not test_excelwriter_fspath" - " and not test_ExcelWriter_dispatch" - ;; TODO: Missing input - " and not TestS3" - " and not s3"))))))))) + (when tests? + (invoke "pytest" "-vv" "pandas" "--skip-slow" + "--skip-network" + "-k" + ;; These tets access the internet: + ;; pandas/tests/io/xml/test_xml.py::test_wrong_url[lxml] + ;; pandas/tests/io/xml/test_xml.py::test_wrong_url[etree] + ;; TODO: the excel tests fail for unknown reasons + (string-append "not test_wrong_url" + " and not test_excelwriter_fspath" + " and not test_ExcelWriter_dispatch" + ;; TODO: Missing input + " and not TestS3" + " and not s3")))))))))) (propagated-inputs `(("python-jinja2" ,python-jinja2) ("python-numpy" ,python-numpy) |