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-rw-r--r--gnu/packages/cran.scm507
1 files changed, 275 insertions, 232 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a39c0e64cb..cc75136a3a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -17,7 +17,7 @@
;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2018, 2019 Brett Gilio <brettg@gnu.org>
;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com>
-;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
+;;; Copyright © 2019, 2020 Wiktor Żelazny <wzelazny@vurv.cz>
;;; Copyright © 2019 Arne Babenhauserheide <arne_bab@web.de>
;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com>
@@ -29,6 +29,8 @@
;;; Copyright © 2020 Lars-Dominik Braun <ldb@leibniz-psychology.org>
;;; Copyright © 2020 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2020 Antoine Côté <antoine.cote@posteo.net>
+;;; Copyright © 2020 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2020 Magali Lemes <magalilemes00@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -89,6 +91,7 @@
#:use-module (gnu packages pulseaudio) ;libsndfile
#:use-module (gnu packages python)
#:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages sqlite)
#:use-module (gnu packages statistics)
#:use-module (gnu packages tcl)
#:use-module (gnu packages tls)
@@ -99,14 +102,14 @@
(define-public r-rticles
(package
(name "r-rticles")
- (version "0.15")
+ (version "0.16")
(source
(origin
(method url-fetch)
(uri (cran-uri "rticles" version))
(sha256
(base32
- "0svh2bcqnlqdxdpw5afz1b980i2q13k8cxpq6flfqbi3dlwf3h8l"))))
+ "1ca3k5sdy9mnm6frcimqwf5k18j14wn69x5iagjnjwhq711l8dv0"))))
(properties `((upstream-name . "rticles")))
(build-system r-build-system)
(propagated-inputs
@@ -989,18 +992,20 @@ directory.")
(define-public r-htmlwidgets
(package
(name "r-htmlwidgets")
- (version "1.5.1")
+ (version "1.5.2")
(source (origin
(method url-fetch)
(uri (cran-uri "htmlwidgets" version))
(sha256
(base32
- "10fp306l1nybkah6jrlrqwwdb6zvklbddp8i3w9v9naj8la5jbnl"))))
+ "0072wlkl58lav3qszzqw6pmx8qra4784r0yb6rx4lg7rbrik6335"))))
(build-system r-build-system)
(propagated-inputs
`(("r-htmltools" ,r-htmltools)
("r-jsonlite" ,r-jsonlite)
("r-yaml" ,r-yaml)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/ramnathv/htmlwidgets")
(synopsis "HTML Widgets for R")
(description
@@ -1012,13 +1017,13 @@ applications.")
(define-public r-htmltable
(package
(name "r-htmltable")
- (version "2.0.1")
+ (version "2.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "htmlTable" version))
(sha256
- (base32 "0ma52kajzxfg9w811d6ldhghzn9xhyr8bh7k5v265k82bzx7rac6"))))
+ (base32 "1gzh0bdxi55p1ckxv4k0a41b1j0grwv2w3lkqz4c3gkw66dk6ja0"))))
(properties `((upstream-name . "htmlTable")))
(build-system r-build-system)
(propagated-inputs
@@ -2409,14 +2414,14 @@ compare different dendrograms to one another.")
(define-public r-getoptlong
(package
(name "r-getoptlong")
- (version "1.0.2")
+ (version "1.0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "GetoptLong" version))
(sha256
(base32
- "1p89v2qzqfxyrmqzkv245716n9i4bllnq77a6gw811mgdhxbd51l"))))
+ "142gi3ifpcz1rhqrbw4wh326jn2q61s659wkzf92ys4dybs43dky"))))
(properties `((upstream-name . "GetoptLong")))
(build-system r-build-system)
(inputs
@@ -3171,19 +3176,21 @@ available in a vignette.")
(define-public r-lava
(package
(name "r-lava")
- (version "1.6.7")
+ (version "1.6.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "lava" version))
(sha256
(base32
- "0ffzxbb8pvfh1m6j61az4ga37snyhylq2941fyc76w7w9i2sixv3"))))
+ "0jdmjjs894mfncswmzz7sa6cy7hqbqii5fcvl3zqkmzpbadb2za2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-numderiv" ,r-numderiv)
("r-squarem" ,r-squarem)
("r-survival" ,r-survival)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/kkholst/lava")
(synopsis "Latent variable models")
(description
@@ -3322,8 +3329,7 @@ dimensioned arrays.")
(properties `((upstream-name . "RMySQL")))
(build-system r-build-system)
(inputs
- `(("mariadb" ,mariadb "lib")
- ("mariadb-dev" ,mariadb "dev")
+ `(("mariadb-dev" ,mariadb "dev")
("zlib" ,zlib)))
(propagated-inputs
`(("r-dbi" ,r-dbi)))
@@ -3401,7 +3407,7 @@ Optimization problems by using the simplex algorithm.")
("r-rcpp" ,r-rcpp)
("r-rcppprogress" ,r-rcppprogress)))
(home-page "http://geometry.r-forge.r-project.org/")
- (synopsis "Mesh generation and surface tesselation")
+ (synopsis "Mesh generator and surface tessellator")
(description
"This package makes the qhull library available in R, in a similar manner
as in Octave. Qhull computes convex hulls, Delaunay triangulations, halfspace
@@ -3525,14 +3531,14 @@ problems as well as resampling based estimators of prediction error.")
(define-public r-psych
(package
(name "r-psych")
- (version "2.0.8")
+ (version "2.0.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "psych" version))
(sha256
(base32
- "0ymds7ql2dv994m73h68dnhbsws8bl09p2rqvl6xsq6c6xr0yryg"))))
+ "0wdh580a0psbdil28n0d85hnp42wmn11hcbnihjq8r7h54drgzpn"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)
@@ -3578,14 +3584,14 @@ by base R methods related to model fitting.")
(define-public r-broom
(package
(name "r-broom")
- (version "0.7.0")
+ (version "0.7.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "broom" version))
(sha256
(base32
- "0bq8w1ckrladzck2g0mgiyjdrzi06kbqalk5q3pfvj1607fdv3d5"))))
+ "12xnpmm1cyhksv4gwcrwgrpw7c0xf1c7chlpng9lk8arifbfvqpg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
@@ -3743,7 +3749,7 @@ color labels, layout, etc.")
(description
"This package implements an approximate string matching version of R's
native @code{match} function. It can calculate various string distances based
-on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment),
+on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal string alignment),
qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro,
Jaro-Winkler). An implementation of soundex is provided as well. Distances
can be computed between character vectors while taking proper care of encoding
@@ -3986,14 +3992,14 @@ programming} (SQP) based solver).")
(define-public r-hardyweinberg
(package
(name "r-hardyweinberg")
- (version "1.6.6")
+ (version "1.6.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "HardyWeinberg" version))
(sha256
(base32
- "1qn1bbzfk4w3mqrzisshw5xx7x249sgmj6qdi39lkqb58a4mf4kh"))))
+ "0b6j1mkpr7ck2nr9fmpnsjdv29jc6vg4b91cg50skmcgky1j0zi7"))))
(properties `((upstream-name . "HardyWeinberg")))
(build-system r-build-system)
(propagated-inputs
@@ -4186,14 +4192,14 @@ modeling for empirical income distributions.")
(define-public r-vcd
(package
(name "r-vcd")
- (version "1.4-7")
+ (version "1.4-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "vcd" version))
(sha256
(base32
- "16aj688nhlcvdxzfsqh4s375v8f8vl8997dl8h1xg29b42nv52gc"))))
+ "030yyhpzsj4ivwrla7p9kgvmyjh6b8fr7czf678ykxjj64ccnvr3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-colorspace" ,r-colorspace)
@@ -4232,14 +4238,14 @@ of Eigenmatrices} (JADE).")
(define-public r-dtw
(package
(name "r-dtw")
- (version "1.21-3")
+ (version "1.22-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "dtw" version))
(sha256
(base32
- "02hyhx1sy5h3vzh9zixy18a7d47df4k5d0wyflcvlcbsbcl6p90s"))))
+ "004gm4mzgdzdj807j3bwqsv5lizmnmz5jq514bdjshhkysnzjz6z"))))
(build-system r-build-system)
(propagated-inputs `(("r-proxy" ,r-proxy)))
(home-page "http://dtw.r-forge.r-project.org/")
@@ -4522,14 +4528,14 @@ Markdown documents.")
(define-public r-seriation
(package
(name "r-seriation")
- (version "1.2-8")
+ (version "1.2-9")
(source
(origin
(method url-fetch)
(uri (cran-uri "seriation" version))
(sha256
(base32
- "1zbdxq0s5rc5v307b69fw9k52m0654ls7pf22lh35ggirig6lwsk"))))
+ "1glxn098ar1v96xlwp85kjxzfd1nyfzp2f82x5z3fm87yv57k4lb"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
@@ -4556,13 +4562,13 @@ iVAT).")
(define-public r-xfun
(package
(name "r-xfun")
- (version "0.17")
+ (version "0.18")
(source
(origin
(method url-fetch)
(uri (cran-uri "xfun" version))
(sha256
- (base32 "1zd5qi1rrz3b1lpisapa2yscanz39ghaamf28g7aq3z9ai2a2ymj"))))
+ (base32 "0iqh9b0a5wlc4lmqf7r169h4m2xji5l1viwwi47qf094rl5r3ddr"))))
(build-system r-build-system)
;; knitr itself depends on xfun
#;
@@ -4706,14 +4712,14 @@ terminals.")
(define-public r-tinytex
(package
(name "r-tinytex")
- (version "0.25")
+ (version "0.26")
(source
(origin
(method url-fetch)
(uri (cran-uri "tinytex" version))
(sha256
(base32
- "0zbhzxxjlkdj9byxyab477p7cnws5y87nyg989lkzarxdc7dglza"))))
+ "02b0v8ydbfspma3rgsdpkf2cm6jl9qm3l9jsrl0xng482b06bb0q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-xfun" ,r-xfun)))
@@ -4774,22 +4780,44 @@ complementary pairs stability selection with improved error bounds
arbitrary user specified variable selection approaches.")
(license license:gpl2)))
+(define-public r-rle
+ (package
+ (name "r-rle")
+ (version "0.9.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "rle" version))
+ (sha256
+ (base32
+ "0sagl0jggg40lihzy7pfq4593rfvc3b3f7g6ggi85s7n18qvwg40"))))
+ (properties `((upstream-name . "rle")))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/rle/")
+ (synopsis "Common functions for run-length encoded vectors")
+ (description
+ "This package provides common @code{base} and @code{stats} methods for
+@code{rle} objects, aiming to make it possible to treat them transparently as
+vectors.")
+ (license license:gpl3)))
+
(define-public r-statnet-common
(package
(name "r-statnet-common")
- (version "4.3.0")
+ (version "4.4.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "statnet.common" version))
(sha256
(base32
- "0ng90i0wm9wlyhjbnmnylc1bbqw396p1dr7f402dyry9x9ck6jl3"))))
+ "1z89an46xcl1d7dacj4irhk6pkajdz7v85b2347vczwdf622pksf"))))
(properties
`((upstream-name . "statnet.common")))
(build-system r-build-system)
(propagated-inputs
- `(("r-coda" ,r-coda)))
+ `(("r-coda" ,r-coda)
+ ("r-rle" ,r-rle)))
(home-page "https://statnet.org")
(synopsis "R scripts and utilities used by the Statnet software")
(description "This package provides non-statistical utilities used by the
@@ -5201,14 +5229,14 @@ interface.")
(define-public r-trend
(package
(name "r-trend")
- (version "1.1.3")
+ (version "1.1.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "trend" version))
(sha256
(base32
- "0bj40acr1sc7vfxdcsdja3g28xsmrclmgb3n94p89gfjcgp8nv1d"))))
+ "1mr5g5gaxiqj6x83ngcbwwh57vhrhcz0x9dh0rmvs9y2ivk29ccs"))))
(build-system r-build-system)
(propagated-inputs
`(("r-extradistr" ,r-extradistr)))
@@ -5471,15 +5499,17 @@ Memorial-Sloan-Kettering Cancer Center (MSKCC).")
(define-public r-import
(package
(name "r-import")
- (version "1.1.0")
+ (version "1.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "import" version))
(sha256
(base32
- "0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"))))
+ "018s0x224gqnv4cjfh0fwliyfg6ma9vslmwybrlizfsmqcc5wp37"))))
(build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/smbache/import")
(synopsis "Import mechanism for R")
(description
@@ -6053,14 +6083,14 @@ additional external tools on any platform.")
(define-public r-openxlsx
(package
(name "r-openxlsx")
- (version "4.1.5")
+ (version "4.2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "openxlsx" version))
(sha256
(base32
- "0wkpa3wsd8rs0pib7cp67iv0s6jn99frcrw7clypqxmvvdwyb9kq"))))
+ "12sjarcmbdww6jmkcqy8c6id94zv3lwmm15ns1y0xj3ipr8qmphb"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
@@ -6388,14 +6418,14 @@ Python to R they are converted back to R types.")
(define-public r-bibtex
(package
(name "r-bibtex")
- (version "0.4.2.2")
+ (version "0.4.2.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "bibtex" version))
(sha256
(base32
- "140hkjzdp3033cvji861rd06z1ixgpnn4n5amygqsmhnixk8ff07"))))
+ "0vdwx6808r73pk15263f33bkqbfmb08d8jkmr4d7h4ml414ikbbv"))))
(build-system r-build-system)
(propagated-inputs `(("r-stringr" ,r-stringr)))
(home-page "https://github.com/romainfrancois/bibtex")
@@ -7126,14 +7156,14 @@ other add-on packages.")
(define-public r-insight
(package
(name "r-insight")
- (version "0.9.5")
+ (version "0.9.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "insight" version))
(sha256
(base32
- "0853kq4j8kic8z2gh5mxfqkwxjs4bdphlajzyvxka7af4r04bfmi"))))
+ "15mws316qfbq3nn6gb7s0m0a6jk2zi056g43yqiw4gp2ar92wd0h"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
@@ -7154,14 +7184,14 @@ information are missing.")
(define-public r-sjlabelled
(package
(name "r-sjlabelled")
- (version "1.1.6")
+ (version "1.1.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "sjlabelled" version))
(sha256
(base32
- "0xvb0yi7c7wiiqjbnbisyb2cjinm11i373jacfv1yzyc9cznzyzq"))))
+ "0d3fsjd2gxchv8mlx9l5pf8xvkmx4pgvizam83f3qss07bmvpzwg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-insight" ,r-insight)))
@@ -7482,14 +7512,14 @@ Group (Non-)Overlap considerations.")
(define-public r-deriv
(package
(name "r-deriv")
- (version "4.0.1")
+ (version "4.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "Deriv" version))
(sha256
(base32
- "16rq65x1xhxvqwn4p427divay3b9fgam2lxccxb8529adnrxmw6p"))))
+ "1n5d10g9qv4fvl8q0q6yc0mzdbba10jniid6k3br3bfqvdp2a4pq"))))
(properties `((upstream-name . "Deriv")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/Deriv")
@@ -8916,14 +8946,14 @@ observation.")
(define-public r-sandwich
(package
(name "r-sandwich")
- (version "2.5-1")
+ (version "3.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "sandwich" version))
(sha256
(base32
- "1mk685b9wq7k566pbml52rj96i5h6b3vf215k9picgmq296nzvyv"))))
+ "0afm6snak7r11dxyl3qirqdjah6d9pdv4afmxwam1nq9bqxyb3w2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-zoo" ,r-zoo)))
@@ -8961,14 +8991,14 @@ packages maintained by Torsten Hothorn.")
(define-public r-multcomp
(package
(name "r-multcomp")
- (version "1.4-13")
+ (version "1.4-14")
(source
(origin
(method url-fetch)
(uri (cran-uri "multcomp" version))
(sha256
(base32
- "1nszi22rcc551yc75h9cdfkdqsxw1rz30vadazmpyzihp1bh63yk"))))
+ "14a55isy1sp745s109nirlk5fryy144cri6dl8y9d9wjhfxz336a"))))
(build-system r-build-system)
(propagated-inputs
`(("r-codetools" ,r-codetools)
@@ -8989,14 +9019,14 @@ Hothorn, Westfall, 2010, CRC Press).")
(define-public r-emmeans
(package
(name "r-emmeans")
- (version "1.5.0")
+ (version "1.5.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "emmeans" version))
(sha256
(base32
- "09nap4aazpbsswqzk0d4kjngwd8sib222s31yd08sd1sqw432c6k"))))
+ "05z3vvykn56g50zhzsphdhfjzdw8g8xfindcas08hbhv5y7izhs8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-estimability" ,r-estimability)
@@ -9309,14 +9339,14 @@ results using @code{ggplot2}.")
(define-public r-effectsize
(package
(name "r-effectsize")
- (version "0.3.2")
+ (version "0.3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "effectsize" version))
(sha256
(base32
- "0h9f260gb8707pcssf8dq7dakpq1ggkxr5kpbrbl8sn8h3qbvws9"))))
+ "00c9j6lc58ls1vrwlpzk3h1lgvxpkcrh7b4ym6kmy4fg4f08izp7"))))
(properties `((upstream-name . "effectsize")))
(build-system r-build-system)
(propagated-inputs
@@ -9336,13 +9366,13 @@ conversion of indices such as Cohen's d, r, odds, etc.")
(define-public r-sjplot
(package
(name "r-sjplot")
- (version "2.8.4")
+ (version "2.8.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "sjPlot" version))
(sha256
- (base32 "0b7k0mshkk8k26w11xbxkb5v0klhq279zn2xdz83cn8k791xkqyd"))))
+ (base32 "07fwa6ga9430irk68g9wcfpn9g24pf8qc2i127nrydm865y7ri24"))))
(properties `((upstream-name . "sjPlot")))
(build-system r-build-system)
(propagated-inputs
@@ -9466,14 +9496,14 @@ terminals that do not support Unicode.")
(define-public r-usethis
(package
(name "r-usethis")
- (version "1.6.1")
+ (version "1.6.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "usethis" version))
(sha256
(base32
- "0vwxsnq615mwc706a4a71gyy0hmvnllbh249gzm7vl3ym5cr0cv0"))))
+ "09lk04kycvf5x9ggrb6pwc7bx5mzqxwialm2w9vn1a0w0gh2gcfc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
@@ -9689,14 +9719,14 @@ users.")
(define-public r-lsei
(package
(name "r-lsei")
- (version "1.2-0.1")
+ (version "1.3-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "lsei" version))
(sha256
(base32
- "1rvzdb33x9ykl5qfwxkps1iylxqzlf1qla3l88420nbq7pxp7m87"))))
+ "1dka0rigfw4vj809qma2dkiwjb3nw5635ynnba5cm299cn7hb2b2"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
@@ -9712,14 +9742,14 @@ problems into least squares ones first.")
(define-public r-npsurv
(package
(name "r-npsurv")
- (version "0.4-0.1")
+ (version "0.5-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "npsurv" version))
(sha256
(base32
- "09nxibp93bp9v8qcx0gnazk7fkvyh0fq9vlgxl639m6ndr7fwp88"))))
+ "1ihxhb42cga1hssj2jv4ah0f4hlwsky899ij5261fzh1wxvdp1xw"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lsei" ,r-lsei)))
@@ -9829,14 +9859,14 @@ analysing multivariate abundance data in community ecology.")
(define-public r-afex
(package
(name "r-afex")
- (version "0.27-2")
+ (version "0.28-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "afex" version))
(sha256
(base32
- "0qsmcddy4449qjj3ajmqvdiqdkhkswmz5dqf150wxwq897p3bvf2"))))
+ "0c47bq2llzw2b4avhkxyhmf1m2zjh9jsjiw2kww9n1bhwqsyr4ci"))))
(build-system r-build-system)
(propagated-inputs
`(("r-car" ,r-car)
@@ -10411,14 +10441,14 @@ components).")
(define-public r-fftwtools
(package
(name "r-fftwtools")
- (version "0.9-8")
+ (version "0.9-9")
(source
(origin
(method url-fetch)
(uri (cran-uri "fftwtools" version))
(sha256
(base32
- "1nqvpzda281rxi1cmwajxxsn3sc3gz7scv8bvs5jm34kf36whha6"))))
+ "0h8lyl2i6zq16ir7xnfj9dhyivxvwikm8lml19s8s8jx95z3n9x9"))))
(build-system r-build-system)
(inputs `(("fftw" ,fftw)))
(home-page "https://github.com/krahim/fftwtools")
@@ -11377,14 +11407,14 @@ preparing, executing, and processing HTTP requests.")
(define-public r-bigrquery
(package
(name "r-bigrquery")
- (version "1.3.1")
+ (version "1.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "bigrquery" version))
(sha256
(base32
- "0mq03sqv5lkyn3dlxvyd6lqqwnryfdaqh05pjvngzp194fxmd9cy"))))
+ "16whccv7f94vf57dvbbrhdskz3nnbmpa11a14kp7aynckldlfy0v"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
@@ -11410,14 +11440,14 @@ preparing, executing, and processing HTTP requests.")
(define-public r-gmp
(package
(name "r-gmp")
- (version "0.6-0")
+ (version "0.6-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "gmp" version))
(sha256
(base32
- "1c9vpr6j6h5f6dm9l535nscl66rvr8sba5az2kswjhmzwb9xpjxc"))))
+ "11rl7qmfrpp1974f0vzsi3zjyx147wlb82ydxak2b60khfvhrn90"))))
(build-system r-build-system)
(arguments
'(#:phases
@@ -11935,13 +11965,13 @@ Differences with other sparse matrix packages are:
(define-public r-fields
(package
(name "r-fields")
- (version "11.4")
+ (version "11.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "fields" version))
(sha256
- (base32 "0x8hbl0rn7gnhn7w45wd757g9in27884qr6vy30xrk150qaq941y"))))
+ (base32 "1mgg5l6w4yvz7cccgfz3h19k11ng1s1hy26rl2h215gnfb24mnga"))))
(build-system r-build-system)
(propagated-inputs
`(("r-maps" ,r-maps)
@@ -11960,14 +11990,14 @@ covariance functions for large data sets.")
(define-public r-spatialextremes
(package
(name "r-spatialextremes")
- (version "2.0-8")
+ (version "2.0-9")
(source
(origin
(method url-fetch)
(uri (cran-uri "SpatialExtremes" version))
(sha256
(base32
- "0r2byz5xxc46zqnigdax28q7446ibmzmsmi10lmm2hdks3ml6sl3"))))
+ "1mhn1c8n3bmgf0fjyac3wji4790zswzkqliqcv3n8kv9806crb0y"))))
(properties
`((upstream-name . "SpatialExtremes")))
(build-system r-build-system)
@@ -12384,14 +12414,14 @@ subsetting.")
(define-public r-globals
(package
(name "r-globals")
- (version "0.12.5")
+ (version "0.13.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "globals" version))
(sha256
(base32
- "1ha8iasgijp4q3v2b0b17y1wh7cd3nvzd9b03w49qm2bidkaf68m"))))
+ "0gqh7dbd38wqyjy9qm85v5k60vld97pyc46wf4xkgi4mr7y0ixg3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-codetools" ,r-codetools)))
@@ -12408,14 +12438,14 @@ them in distributed compute environments.")
(define-public r-future
(package
(name "r-future")
- (version "1.18.0")
+ (version "1.19.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "future" version))
(sha256
(base32
- "01fp8kgjf0k6c83q1w3dy9z90g72cc9d0004d1qw6n1j65nwxg4f"))))
+ "12f483h7g172ygafbg7h43vykv0f7xz9miwqf5q8dyv7gpgqi5fl"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
@@ -12887,14 +12917,14 @@ to easily call your own custom JavaScript functions from R.")
(define-public r-colourpicker
(package
(name "r-colourpicker")
- (version "1.0")
+ (version "1.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "colourpicker" version))
(sha256
(base32
- "0z3v2083g7kwdp21x9s2n1crfh24agpdq3yxkcdzc2awn2pwpnpi"))))
+ "1qjispj7i12m02js5cm5xlgn5lyff0kc5ybz6lbknz8q5lkbdyrd"))))
(build-system r-build-system)
(arguments
`(#:modules ((guix build utils)
@@ -12935,7 +12965,8 @@ to easily call your own custom JavaScript functions from R.")
("r-shiny" ,r-shiny)
("r-shinyjs" ,r-shinyjs)))
(native-inputs
- `(("uglify-js" ,uglify-js)
+ `(("r-knitr" ,r-knitr)
+ ("uglify-js" ,uglify-js)
("js-jquery"
,(origin
(method url-fetch)
@@ -13927,7 +13958,8 @@ tessellation.")
(inputs
`(("gdal" ,gdal)
("geos" ,geos)
- ("proj" ,proj.4)
+ ("proj" ,proj)
+ ("sqlite" ,sqlite)
("zlib" ,zlib)))
(propagated-inputs
`(("r-classint" ,r-classint)
@@ -14027,13 +14059,13 @@ also provided to illustrate various methods.")
(define-public r-pegas
(package
(name "r-pegas")
- (version "0.13")
+ (version "0.14")
(source
(origin
(method url-fetch)
(uri (cran-uri "pegas" version))
(sha256
- (base32 "002i7s4g0nhnq0v05gs0yssqiyhpq2f7rw2rhn31hsbgxc86frvy"))))
+ (base32 "0lr06gajzdanj8ax91kgpxsj863m367v2s1z5gnxps3999n0xybx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-adegenet" ,r-adegenet)
@@ -14477,44 +14509,6 @@ authoring books and technical documents with R Markdown.")
that accept short and long options.")
(license license:gpl2+)))
-(define-public r-wgcna
- (package
- (name "r-wgcna")
- (version "1.69")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "WGCNA" version))
- (sha256
- (base32
- "022hkprnrafvggi8pkjffkvk1qlnibmbbxxrni00wkrdbga5589f"))))
- (properties `((upstream-name . "WGCNA")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)
- ("r-doparallel" ,r-doparallel)
- ("r-dynamictreecut" ,r-dynamictreecut)
- ("r-fastcluster" ,r-fastcluster)
- ("r-foreach" ,r-foreach)
- ("r-go-db" ,r-go-db)
- ("r-hmisc" ,r-hmisc)
- ("r-impute" ,r-impute)
- ("r-rcpp" ,r-rcpp)
- ("r-survival" ,r-survival)
- ("r-matrixstats" ,r-matrixstats)
- ("r-preprocesscore" ,r-preprocesscore)))
- (home-page
- "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
- (synopsis "Weighted correlation network analysis")
- (description
- "This package provides functions necessary to perform Weighted
-Correlation Network Analysis on high-dimensional data. It includes functions
-for rudimentary data cleaning, construction and summarization of correlation
-networks, module identification and functions for relating both variables and
-modules to sample traits. It also includes a number of utility functions for
-data manipulation and visualization.")
- (license license:gpl2+)))
-
(define-public r-kernlab
(package
(name "r-kernlab")
@@ -14829,20 +14823,21 @@ the XKCD web comic.")
(define-public r-msigdbr
(package
(name "r-msigdbr")
- (version "7.1.1")
+ (version "7.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "msigdbr" version))
(sha256
(base32
- "0jvi49qa7616s58p0rx66pcw7h12rc8kgcg9225jk7pc3934hnzh"))))
+ "1rc2p9vw57pn4prmfgay4w18qd53ggq7wxfsi9kp7w25ciip1dq1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-magrittr" ,r-magrittr)
("r-rlang" ,r-rlang)
- ("r-tibble" ,r-tibble)))
+ ("r-tibble" ,r-tibble)
+ ("r-tidyselect" ,r-tidyselect)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/igordot/msigdbr")
@@ -15219,14 +15214,14 @@ discriminant analysis for the purpose of classifying high dimensional data.")
(define-public r-ggvis
(package
(name "r-ggvis")
- (version "0.4.5")
+ (version "0.4.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggvis" version))
(sha256
(base32
- "091i9f17912j8qcyxppjgwzjnyqj7769ixs9d2gjg6f2clskqdw2"))))
+ "1k40mkfxj66qvwbsp849maihv6vxkdprhhzjkwffwn0lwl78lsz1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
@@ -15756,17 +15751,18 @@ code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.")
(define-public r-sctransform
(package
(name "r-sctransform")
- (version "0.2.1")
+ (version "0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "sctransform" version))
(sha256
(base32
- "07v3lzccsrkh1glfxd1q20r8f8gl9ls5az0s1dvxm4vcls0hlhyn"))))
+ "1vyjxzghfvw57pwncvkfg3lbcsqfdsiplh1h4vscxpnd3872nrq3"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-future-apply" ,r-future-apply)
+ `(("r-future" ,r-future)
+ ("r-future-apply" ,r-future-apply)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-mass" ,r-mass)
@@ -16175,14 +16171,14 @@ includes data sets from oceanography.")
(define-public r-ggfortify
(package
(name "r-ggfortify")
- (version "0.4.10")
+ (version "0.4.11")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggfortify" version))
(sha256
(base32
- "0wmcwp63h90v3f00ixszvis4z28im621jickvc0wgi6qvjvnayq0"))))
+ "1wfm7l9bz6msh7rflgfv9dgbxh1ikz2ay0v7sgk9nkc24y6lhbpk"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
@@ -16535,7 +16531,7 @@ guaranteeing well-connected communities.\" <arXiv:1810.08473>.")
"The @code{ggplot2} package provides a strong API for sequentially
building up a plot, but does not concern itself with composition of multiple
plots. Patchwork is a package that expands the API to allow for arbitrarily
-complex composition of plots by providing mathmatical operators for combining
+complex composition of plots by providing mathematical operators for combining
multiple plots.")
(license license:expat)))
@@ -16659,13 +16655,13 @@ function and interfaces to external frameworks.")
(define-public r-covr
(package
(name "r-covr")
- (version "3.5.0")
+ (version "3.5.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "covr" version))
(sha256
- (base32 "1pvr95h7jg9hqq1qq1cccy323pkxldrwafl08151cc410499k4fb"))))
+ (base32 "0v5cv3cw2kpdr6wxmkbd3wclavr17zipypdcb10hhmpa4cvgqk55"))))
(properties `((upstream-name . "covr")))
(build-system r-build-system)
(propagated-inputs
@@ -16692,14 +16688,14 @@ both R code and compiled C/C++/FORTRAN code.")
(define-public r-systemfonts
(package
(name "r-systemfonts")
- (version "0.3.1")
+ (version "0.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "systemfonts" version))
(sha256
(base32
- "0ldxgcayyisp2gcbv4xw9zpb48bp4czi8016kq5nqdqhv1qb3sz0"))))
+ "12hdvv66kkd3b4rs82blc3c4ifz2dw1048sqpkbz6vkk1zqpc53x"))))
(properties `((upstream-name . "systemfonts")))
(build-system r-build-system)
(propagated-inputs
@@ -16840,14 +16836,14 @@ in pipelines.")
(define-public r-parameters
(package
(name "r-parameters")
- (version "0.8.5")
+ (version "0.8.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "parameters" version))
(sha256
(base32
- "1vax5p1znq2ddbks2i614hbrnn2x6x71942xx49p813qk8dh284l"))))
+ "0z4qy62pxiwnsgi77ydymlc12ss9p9gbqljik2h0rwlmkpmk016w"))))
(properties `((upstream-name . "parameters")))
(build-system r-build-system)
(propagated-inputs
@@ -16869,18 +16865,18 @@ effect size.")
(define-public r-rgdal
(package
(name "r-rgdal")
- (version "1.5-16")
+ (version "1.5-17")
(source
(origin
(method url-fetch)
(uri (cran-uri "rgdal" version))
(sha256
- (base32 "0rwlsafqxgqflfid4ciaa9qz3f75fgw8hilhaqj558gdxg8bzigp"))))
+ (base32 "16vk3a8azbqhv4m598i78hs9m1nlfcls6lx011v0wgiw6ksq64zw"))))
(properties `((upstream-name . "rgdal")))
(build-system r-build-system)
(inputs
`(("gdal" ,gdal)
- ("proj.4" ,proj.4)
+ ("proj" ,proj)
("zlib" ,zlib)))
(propagated-inputs
`(("r-sp" ,r-sp)))
@@ -17123,14 +17119,14 @@ structural data.")
(define-public r-bios2cor
(package
(name "r-bios2cor")
- (version "2.1")
+ (version "2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "Bios2cor" version))
(sha256
(base32
- "04wk1cjrrxhpv1kdhd67r1qvjv268xxi0z0r105wy912110z9m6x"))))
+ "1wkj9vr33m9jilidil9jpw5rzr3pf7gkimxdvch22ks4bgkx7l1w"))))
(properties `((upstream-name . "Bios2cor")))
(build-system r-build-system)
(propagated-inputs
@@ -18028,14 +18024,14 @@ See e.g. Gentle (2003) @url{doi:10.1007/b97336}.")
(define-public r-lhs
(package
(name "r-lhs")
- (version "1.0.2")
+ (version "1.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "lhs" version))
(sha256
(base32
- "0n0i1hr9gmc0hfcs2cvpjvdfgm6k26rhcq3q22r8ic0gfj953572"))))
+ "1p4h03qlijs2a59wfd4rlvdlb9i87pw2zm8xsjd6yzz8vlm9yglh"))))
(properties `((upstream-name . "lhs")))
(build-system r-build-system)
(propagated-inputs `(("r-rcpp" ,r-rcpp)))
@@ -18051,14 +18047,14 @@ Latin Hypercube Samples.")
(define-public r-acebayes
(package
(name "r-acebayes")
- (version "1.9")
+ (version "1.10")
(source
(origin
(method url-fetch)
(uri (cran-uri "acebayes" version))
(sha256
(base32
- "1imfwm1vpbb24vfmfn1nljhmaz8429mwjihw34892p387s8h7xz2"))))
+ "11bffz430gdfdaxjx3simig66vhynmx6l1ylac4q2shcmj52nx73"))))
(properties `((upstream-name . "acebayes")))
(build-system r-build-system)
(propagated-inputs
@@ -19654,7 +19650,7 @@ on distances rather than on unit x variables.")
"This package provides tools for depth functions methodology applied to
multivariate analysis. Besides allowing calculation of depth values and
depth-based location estimators, the package includes functions or drawing
-contour plots and perspective plots of depth functions. Euclidian and
+contour plots and perspective plots of depth functions. Euclidean and
spherical depths are supported.")
(license license:gpl2)))
@@ -19907,14 +19903,14 @@ generation for the Poisson binomial distribution.")
(define-public r-diagram
(package
(name "r-diagram")
- (version "1.6.4")
+ (version "1.6.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "diagram" version))
(sha256
(base32
- "0f6ffprn5k0ir1s7m9s7izc64aa17r3gnygagz5bihrlsvawaavw"))))
+ "1r3lyl0h7mk9cfg8smr3jydfkjdawaphnxibkxfjqa7029vkxh79"))))
(properties `((upstream-name . "diagram")))
(build-system r-build-system)
(propagated-inputs
@@ -20485,14 +20481,14 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.")
(define-public r-quanteda
(package
(name "r-quanteda")
- (version "2.1.1")
+ (version "2.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "quanteda" version))
(sha256
(base32
- "1wlrd7g2b459pnkqhihxhn74f37py1c9pxrdzp5xzp4mnbdxcsj8"))))
+ "13rjwgmg5v1dbryrs9ifyy76s5ib6wrbrm2y5af44vhf1h6p9cvy"))))
(properties `((upstream-name . "quanteda")))
(build-system r-build-system)
(propagated-inputs
@@ -20561,14 +20557,14 @@ Gibbs sampling by Xuan-Hieu Phan and co-authors.")
(define-public r-stm
(package
(name "r-stm")
- (version "1.3.5")
+ (version "1.3.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "stm" version))
(sha256
(base32
- "1yyfxaxqc6yq0yq68zhdnhpwpvsyp71dlmivn7zxixfmp932s6cn"))))
+ "0qwq4nin2n9fjd06852r8k7arvcgh46kcfb3lm21swgx6j8bgrhb"))))
(properties `((upstream-name . "stm")))
(build-system r-build-system)
(propagated-inputs
@@ -20770,14 +20766,14 @@ least squares.")
(define-public r-regsem
(package
(name "r-regsem")
- (version "1.5.2")
+ (version "1.6.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "regsem" version))
(sha256
(base32
- "0ch057010xfsw0nqcsarzakdbiplvxaldyqlbbacspqs65ax1yk7"))))
+ "14nrzyrkrijdrr4jwkri5zra2wh36w68wy6xs600l2z1633h2lmn"))))
(properties `((upstream-name . "regsem")))
(build-system r-build-system)
(propagated-inputs
@@ -20785,6 +20781,8 @@ least squares.")
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-rsolnp" ,r-rsolnp)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/package=regsem")
(synopsis "Regularized structural equation modeling")
(description
@@ -20839,14 +20837,14 @@ and analyze Stan models.")
(define-public r-rpf
(package
(name "r-rpf")
- (version "1.0.4")
+ (version "1.0.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "rpf" version))
(sha256
(base32
- "17crcgsbcsh0c00n7bgdqfnd7n1vzz7drfxjs7d18253yl5x44pl"))))
+ "0kz7i7g3l16irz6bxgnkxdmmd931m1fk6rl72dvs21ir5brr010l"))))
(properties `((upstream-name . "rpf")))
(build-system r-build-system)
(propagated-inputs
@@ -21937,7 +21935,7 @@ appropriate dog and cat images for many status codes.")
(build-system r-build-system)
(propagated-inputs
`(("r-stringr" ,r-stringr)
- ("r-magrittr", r-magrittr)))
+ ("r-magrittr" ,r-magrittr)))
(home-page "https://github.com/stefano-meschiari/latex2exp/")
(synopsis "Use LaTeX expressions in plots")
(description "@code{latex2exp} parses and converts LaTeX math formulas to
@@ -22141,7 +22139,7 @@ general, via different versions of bridge sampling.")
(description
"This package provides different approaches for selecting the threshold
in generalized Pareto distributions. Most of them are based on minimizing the
-AMSE-criterion or atleast by reducing the bias of the assumed GPD-model.
+AMSE-criterion or at least by reducing the bias of the assumed GPD-model.
Others are heuristically motivated by searching for stable sample paths, i.e.
a nearly constant region of the tail index estimator with respect to k, which
is the number of data in the tail. The third class is motivated by graphical
@@ -22174,14 +22172,14 @@ is also implemented here.")
(define-public r-aws
(package
(name "r-aws")
- (version "2.4-3")
+ (version "2.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "aws" version))
(sha256
(base32
- "0ccm8ffjf8bylhfr64j9wzi49hzigz4bs172pvkb0bi4d5vdr0l5"))))
+ "1mwg1q7l4a07g5aa9c6kh3fpl9lakk01pbzlk7ixbpy12yfvj9nm"))))
(properties
`((upstream-name . "aws")))
(build-system r-build-system)
@@ -22338,21 +22336,22 @@ infinite-precision rational arithmetic.")
(define-public r-rxnat
(package
(name "r-rxnat")
- (version "1.0.12")
+ (version "1.0.14")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rxnat" version))
(sha256
(base32
- "06w99b5lvpycykzlga6grw33zkajwbb04s89s37wy9zxy42vc4cb"))))
+ "00fl68pa0c2vy4xlny67pn41lzgm7b97wgg3dwm6z35izca62l11"))))
(properties
`((upstream-name . "Rxnat")))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-httr" ,r-httr)
- ("r-rcurl" ,r-rcurl)))
+ ("r-rcurl" ,r-rcurl)
+ ("r-tibble" ,r-tibble)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://cran.r-project.org/web/packages/Rxnat/")
@@ -22575,50 +22574,6 @@ Try a demo of the LSD by running @code{demotour()}.")
;; Either version
(license (list license:gpl2 license:gpl3))))
-(define-public r-fourcseq
- (package
- (name "r-fourcseq")
- (version "1.22.1")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "FourCSeq" version))
- (sha256
- (base32 "14q1ijnqnbd9xs60sfvyqjfiypjrvhacpwp2v85yfhcxw870cx5b"))))
- (properties `((upstream-name . "FourCSeq")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-biostrings" ,r-biostrings)
- ("r-deseq2" ,r-deseq2)
- ("r-fda" ,r-fda)
- ("r-genomicalignments" ,r-genomicalignments)
- ("r-genomicranges" ,r-genomicranges)
- ("r-ggbio" ,r-ggbio)
- ("r-ggplot2" ,r-ggplot2)
- ("r-gtools" ,r-gtools)
- ("r-lsd" ,r-lsd)
- ("r-matrix" ,r-matrix)
- ("r-reshape2" ,r-reshape2)
- ("r-rsamtools" ,r-rsamtools)
- ("r-rtracklayer" ,r-rtracklayer)
- ("r-summarizedexperiment" ,r-summarizedexperiment)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page
- "https://bioconductor.org/packages/release/bioc/html/FourCSeq.html")
- (synopsis "Analysis of multiplexed 4C sequencing data")
- (description
- "This package is an R package dedicated to the analysis of (multiplexed)
-4C sequencing data. @code{r-fourcseq} provides a pipeline to detect specific
-interactions between DNA elements and identify differential interactions
-between conditions. The statistical analysis in R starts with individual bam
-files for each sample as inputs. To obtain these files, the package contains
-a Python script to demultiplex libraries and trim off primer sequences. With
-a standard alignment software the required bam files can be then be
-generated.")
- (license license:gpl3+)))
-
(define-public r-phylogram
(package
(name "r-phylogram")
@@ -22786,14 +22741,14 @@ incremented as outlined at @url{http://semver.org}.")
(define-public r-binman
(package
(name "r-binman")
- (version "0.1.1")
+ (version "0.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "binman" version))
(sha256
(base32
- "0hm0h285p4v9lhrqjy8s22f1s1vmfpfla5iaycpj8vw3qb3632az"))))
+ "00l7m98h41r67gf0qxqis3vx63j7wylnk9vlgcyk41szkrz8ikkc"))))
(properties `((upstream-name . "binman")))
(build-system r-build-system)
(propagated-inputs
@@ -23138,14 +23093,14 @@ formal inference.")
(define-public r-gaston
(package
(name "r-gaston")
- (version "1.5.6")
+ (version "1.5.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "gaston" version))
(sha256
(base32
- "1bx6iqfjb9lf3vn0z7v8wjv9m7issvqsnymm4qsgl3622s6qz6rg"))))
+ "14z94dpln4dvgrv2w7w9ik7h6rpvbf02qhq1hqzx8c2cndzxr21i"))))
(properties `((upstream-name . "gaston")))
(build-system r-build-system)
(inputs `(("zlib" ,zlib)))
@@ -23166,14 +23121,14 @@ for linear mixed models (AIREML).")
(define-public r-cpp11
(package
(name "r-cpp11")
- (version "0.2.1")
+ (version "0.2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "cpp11" version))
(sha256
(base32
- "1113y61lj4cg1d2yjavdx9zih5rzb4pnxmj5v3sr4bhzlxz2scda"))))
+ "1b1h7kjl3xrd4nfly7wd6v8mbyancm632r4k37pafs8xi6cqm848"))))
(properties `((upstream-name . "cpp11")))
(build-system r-build-system)
(native-inputs `(("r-knitr" ,r-knitr)))
@@ -23744,14 +23699,14 @@ more.")
(define-public r-workflows
(package
(name "r-workflows")
- (version "0.1.3")
+ (version "0.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "workflows" version))
(sha256
(base32
- "1d5njd1xdl8kghlbar4acgl9hxq83p6k7yks592cvakmcz7f853m"))))
+ "1mj0ibl6myzw5vl5n4gcfy7fz8wd1755kp8sdy18isxg8h5h23ya"))))
(properties `((upstream-name . "workflows")))
(build-system r-build-system)
(propagated-inputs
@@ -23761,7 +23716,8 @@ more.")
("r-glue" ,r-glue)
("r-hardhat" ,r-hardhat)
("r-parsnip" ,r-parsnip)
- ("r-rlang" ,r-rlang)))
+ ("r-rlang" ,r-rlang)
+ ("r-tidyselect" ,r-tidyselect)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/tidymodels/workflows")
@@ -23836,25 +23792,81 @@ to a data set such as confusion matrices, class probability curve summaries,
and regression metrics (e.g., RMSE).")
(license license:gpl2)))
+(define-public r-warp
+ (package
+ (name "r-warp")
+ (version "0.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "warp" version))
+ (sha256
+ (base32
+ "16bmym91h0sbbh4iqasqs0f4kp3jqlm3sqgc356mznhxwnsm8dm2"))))
+ (properties `((upstream-name . "warp")))
+ (build-system r-build-system)
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/DavisVaughan/warp")
+ (synopsis "Group dates")
+ (description
+ "This package provides tooling to group dates by a variety of periods
+including: yearly, monthly, by second, by week of the month, and more. The
+groups are defined in such a way that they also represent the distance between
+dates in terms of the period. This extracts valuable information that can be
+used in further calculations that rely on a specific temporal spacing between
+observations.")
+ (license license:expat)))
+
+(define-public r-slider
+ (package
+ (name "r-slider")
+ (version "0.1.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "slider" version))
+ (sha256
+ (base32
+ "1x4jwfxam4czfkb1s5qds5krfw1h2p5a4rh6f5z4yvhsv0d81xck"))))
+ (properties `((upstream-name . "slider")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-glue" ,r-glue)
+ ("r-rlang" ,r-rlang)
+ ("r-vctrs" ,r-vctrs)
+ ("r-warp" ,r-warp)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/DavisVaughan/slider")
+ (synopsis "Sliding window functions")
+ (description
+ "This package provides type-stable rolling window functions over any R
+data type. Cumulative and expanding windows are also supported. For more
+advanced usage, an index can be used as a secondary vector that defines how
+sliding windows are to be created.")
+ (license license:expat)))
+
(define-public r-rsample
(package
(name "r-rsample")
- (version "0.0.7")
+ (version "0.0.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "rsample" version))
(sha256
(base32
- "0s6hgq0rcv3ianyidq3n9z34y5ww51gaggqkwmwns9yyxmwfjcm8"))))
+ "1psmxk16d4bz1v05x0gb9hn4brkdjxw8hjbxmj62snichnix3q3i"))))
(properties `((upstream-name . "rsample")))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
+ ("r-ellipsis" ,r-ellipsis)
("r-furrr" ,r-furrr)
("r-generics" ,r-generics)
+ ("r-modeldata" ,r-modeldata)
("r-purrr" ,r-purrr)
("r-rlang" ,r-rlang)
+ ("r-slider" ,r-slider)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
("r-tidyselect" ,r-tidyselect)
@@ -23891,14 +23903,14 @@ Design} (SFD) and to test their quality.")
(define-public r-dials
(package
(name "r-dials")
- (version "0.0.8")
+ (version "0.0.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "dials" version))
(sha256
(base32
- "0jxmlcy20y57chflx91fqz6c4pbdckzr7jirq4s72vp723avrr4p"))))
+ "0g9wj2py4wz703rh4p7hk8qxqnkm7zyrypv4qz4vaqziazjsmxks"))))
(properties `((upstream-name . "dials")))
(build-system r-build-system)
(propagated-inputs
@@ -24003,14 +24015,14 @@ models without involving a test set.")
(define-public r-tidypredict
(package
(name "r-tidypredict")
- (version "0.4.6")
+ (version "0.4.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidypredict" version))
(sha256
(base32
- "1fx1nr8fry3nwy2391g26zkqakdf8f3j7zyrihbc0qhscvbdskiy"))))
+ "0z0wr0ssl1h0smr9431cy1ik5kxfy1nvkdcyyq9c0355h828hybh"))))
(properties `((upstream-name . "tidypredict")))
(build-system r-build-system)
(propagated-inputs
@@ -24019,7 +24031,9 @@ models without involving a test set.")
("r-knitr" ,r-knitr)
("r-purrr" ,r-purrr)
("r-rlang" ,r-rlang)
- ("r-tibble" ,r-tibble)))
+ ("r-stringr" ,r-stringr)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://tidypredict.tidymodels.org")
@@ -24125,14 +24139,14 @@ vignettes in all common formats.")
(define-public r-tidytext
(package
(name "r-tidytext")
- (version "0.2.5")
+ (version "0.2.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidytext" version))
(sha256
(base32
- "0kwbpffdnqrb6hgrrmrfnx890imbzvp5bs6sj1k72if28qijarm5"))))
+ "0xmjkab7p13ncfglf3a9hvndf8fh96mmxw3l7hcpbnaq9qkiwk29"))))
(properties `((upstream-name . "tidytext")))
(build-system r-build-system)
(propagated-inputs
@@ -24437,13 +24451,13 @@ as allowing spectra with different resolutions.")
(define-public r-seurat
(package
(name "r-seurat")
- (version "3.2.1")
+ (version "3.2.2")
(source (origin
(method url-fetch)
(uri (cran-uri "Seurat" version))
(sha256
(base32
- "0jipc4xpmx56jzc31w6nsl77ah8x8wq7jclg2mxhjql4ixkwmz54"))))
+ "048vnj0c3mrwhr6yq3jqhgnkg68w99nj1ccsmgnd8rl694w26spj"))))
(properties `((upstream-name . "Seurat")))
(build-system r-build-system)
(propagated-inputs
@@ -24584,3 +24598,32 @@ enrichment analysis (GSEA) calculation with or without the absolute filtering.
Without filtering, users can perform (original) two-tailed or one-tailed
absolute GSEA.")
(license license:gpl2)))
+
+(define-public r-calculus
+ (package
+ (name "r-calculus")
+ (version "0.2.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "calculus" version))
+ (sha256
+ (base32
+ "0hs7hzjl6xjza20v9zx9a1piywxa6w3h2rskr52d1dcbc0vwhinp"))))
+ (properties `((upstream-name . "calculus")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-rcpp" ,r-rcpp)))
+ (home-page "https://github.com/guidotti/calculus")
+ (synopsis "High dimensional numerical and symbolic calculus")
+ (description
+ "Efficient C++ optimized functions for numerical and symbolic calculus.
+It includes basic symbolic arithmetic, tensor calculus, Einstein summing
+convention, fast computation of the Levi-Civita symbol and generalized
+Kronecker delta, Taylor series expansion, multivariate Hermite polynomials,
+accurate high-order derivatives, differential operators (Gradient, Jacobian,
+Hessian, Divergence, Curl, Laplacian) and numerical integration in arbitrary
+orthogonal coordinate systems: cartesian, polar, spherical, cylindrical,
+parabolic or user defined by custom scale factors.")
+ (license license:gpl3)))
+
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