diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bcb27571a1..1d8011bf79 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -950,6 +950,46 @@ UCSC genome browser.") (native-inputs `(("python2-setuptools" ,python2-setuptools) ,@(package-native-inputs base)))))) +(define-public python-plastid + (package + (name "python-plastid") + (version "0.4.5") + (source (origin + (method url-fetch) + (uri (pypi-uri "plastid" version)) + (sha256 + (base32 + "1nhxw8a5gn9as58i2ih52c5cjwj48ik418pzsjwph3s66mmy9yvq")))) + (properties `((python2-variant . ,(delay python2-plastid)))) + (build-system python-build-system) + (arguments + ;; Some test files are not included. + `(#:tests? #f)) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy) + ("python-pandas" ,python-pandas) + ("python-pysam" ,python-pysam) + ("python-matplotlib" ,python-matplotlib) + ("python-biopython" ,python-biopython) + ("python-twobitreader" ,python-twobitreader))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-nose" ,python-nose))) + (home-page "https://github.com/joshuagryphon/plastid") + (synopsis "Python library for genomic analysis") + (description + "plastid is a Python library for genomic analysis – in particular, +high-throughput sequencing data – with an emphasis on simplicity.") + (license license:bsd-3))) + +(define-public python2-plastid + (let ((base (package-with-python2 (strip-python2-variant python-plastid)))) + (package + (inherit base) + (native-inputs `(("python2-setuptools" ,python2-setuptools) + ,@(package-native-inputs base)))))) + (define-public cd-hit (package (name "cd-hit") |