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-rw-r--r--gnu/packages/bioinformatics.scm40
1 files changed, 0 insertions, 40 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 85e586a174..abfaa3d4af 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8486,46 +8486,6 @@ analysis, variant tools is project based and provides a whole set of tools to
manipulate and analyze genetic variants.")
(license license:gpl3+)))
-(define-public r-copywriter
- (package
- (name "r-copywriter")
- (version "2.22.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "CopywriteR" version))
- (sha256
- (base32
- "060p6l6l8i6b15hyyz5v5kkxih3h4wcciixii51m9mn82z23xr2f"))))
- (properties `((upstream-name . "CopywriteR")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocparallel" ,r-biocparallel)
- ("r-chipseq" ,r-chipseq)
- ("r-copyhelper" ,r-copyhelper)
- ("r-data-table" ,r-data-table)
- ("r-dnacopy" ,r-dnacopy)
- ("r-futile-logger" ,r-futile-logger)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicalignments" ,r-genomicalignments)
- ("r-genomicranges" ,r-genomicranges)
- ("r-gtools" ,r-gtools)
- ("r-iranges" ,r-iranges)
- ("r-matrixstats" ,r-matrixstats)
- ("r-rsamtools" ,r-rsamtools)
- ("r-s4vectors" ,r-s4vectors)))
- (home-page "https://github.com/PeeperLab/CopywriteR")
- (synopsis "Copy number information from targeted sequencing")
- (description
- "CopywriteR extracts DNA copy number information from targeted sequencing
-by utilizing off-target reads. It allows for extracting uniformly distributed
-copy number information, can be used without reference, and can be applied to
-sequencing data obtained from various techniques including chromatin
-immunoprecipitation and target enrichment on small gene panels. Thereby,
-CopywriteR constitutes a widely applicable alternative to available copy
-number detection tools.")
- (license license:gpl2)))
-
(define-public r-methylkit
(package
(name "r-methylkit")