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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 025faadf76..8ca0521578 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2600,6 +2600,37 @@ purposes. The package also contains legacy support for early single-end, ungapped alignment formats.") (license license:artistic2.0))) +(define-public r-slingshot + (package + (name "r-slingshot") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "slingshot" version)) + (sha256 + (base32 + "0sz4frlk7c1g8adyfcgi1mf1xsf9n5zib4bw7j9kl711dbhvkqwl")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-igraph" ,r-igraph) + ("r-matrixstats" ,r-matrixstats) + ("r-princurve" ,r-princurve) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/slingshot") + (synopsis "Tools for ordering single-cell sequencing") + (description "This package provides functions for inferring continuous, +branching lineage structures in low-dimensional data. Slingshot was designed +to model developmental trajectories in single-cell RNA sequencing data and +serve as a component in an analysis pipeline after dimensionality reduction +and clustering. It is flexible enough to handle arbitrarily many branching +events and allows for the incorporation of prior knowledge through supervised +graph construction.") + (license license:artistic2.0))) + (define-public r-structuralvariantannotation (package (name "r-structuralvariantannotation") |