aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
diff options
context:
space:
mode:
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm12
1 files changed, 8 insertions, 4 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 81c0f078fc..16ab91c7b3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2300,20 +2300,24 @@ defined categories which are over/under represented in RNA-seq data.")
(define-public r-glimma
(package
(name "r-glimma")
- (version "1.16.0")
+ (version "2.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Glimma" version))
(sha256
(base32
- "1bxfgwjqb9p400a5a5q6p17kcnl3ddz090llihkfih9kyxii9n4y"))))
+ "0gy30v30lw27frhmw39pzacqzrv2vwj5rsp6gb3yifllrahdiffv"))))
(properties `((upstream-name . "Glimma")))
(build-system r-build-system)
(propagated-inputs
- `(("r-edger" ,r-edger)
+ `(("r-deseq2" ,r-deseq2)
+ ("r-edger" ,r-edger)
+ ("r-htmlwidgets" ,r-htmlwidgets)
("r-jsonlite" ,r-jsonlite)
- ("r-s4vectors" ,r-s4vectors)))
+ ("r-limma" ,r-limma)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/Shians/Glimma")
d2e692660ed1682c'>gnu: linux-libre: Update to 5.9.1....* gnu/packages/aux-files/linux-libre/5.8-arm.conf, gnu/packages/aux-files/linux-libre/5.8-arm64.conf, gnu/packages/aux-files/linux-libre/5.8-i686.conf, gnu/packages/aux-files/linux-libre/5.8-x86_64.conf: Delete files. * gnu/packages/aux-files/linux-libre/5.9-arm.conf, gnu/packages/aux-files/linux-libre/5.9-arm64.conf, gnu/packages/aux-files/linux-libre/5.9-i686.conf, gnu/packages/aux-files/linux-libre/5.9-x86_64.conf: New files. * Makefile.am (AUX_FILES): Adjust accordingly. * gnu/packages/linux.scm (linux-libre-5.8-version, deblob-scripts-5.8, linux-libre-5.8-pristine-source, linux-libre-5.8-source, linux-libre-headers-5.8, linux-libre-5.8): Remove variables. (linux-libre-5.9-version, deblob-scripts-5.9, linux-libre-5.9-pristine-source, linux-libre-5.9-source, linux-libre-headers-5.9, linux-libre-5.9): New variables. (linux-libre-version, linux-libre-pristine-source, linux-libre-source, linux-libre): Point to linux-libre-5.9*. (linux-libre-with-bpf): Use linux-libre-5.9. Leo Famulari 2020-10-15gnu: linux-libre: Enable XDP sockets and their monitoring....* gnu/packages/aux-files/linux-libre/4.19-arm.conf: Enable AF_XDP sockets and the associated monitor interface. * gnu/packages/aux-files/linux-libre/4.19-arm64.conf: Likewise * gnu/packages/aux-files/linux-libre/4.19-i686.conf: Likewise * gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: Likewise * gnu/packages/aux-files/linux-libre/5.4-arm.conf: Likewise * gnu/packages/aux-files/linux-libre/5.4-arm64.conf: Likewise * gnu/packages/aux-files/linux-libre/5.4-i686.conf: Likewise * gnu/packages/aux-files/linux-libre/5.4-x86_64.conf: Likewise * gnu/packages/aux-files/linux-libre/5.8-arm.conf: Likewise * gnu/packages/aux-files/linux-libre/5.8-arm64.conf: Likewise * gnu/packages/aux-files/linux-libre/5.8-i686.conf: Likewise * gnu/packages/aux-files/linux-libre/5.8-x86_64.conf: Likewise Tobias Geerinckx-Rice via Guix-patches via 2020-08-30gnu: Remove linux-libre 5.7....The 5.7 kernel series is no longer supported upstream. * gnu/packages/linux.scm (deblob-scripts-5.7, linux-libre-5.7-version, linux-libre-5.7-pristine-source, linux-libre-5.7-source, linux-libre-headers-5.7, linux-libre-5.7) Remove variables. * gnu/packages/aux-files/linux-libre/5.7-arm.conf, gnu/packages/aux-files/linux-libre/5.7-arm64.conf, gnu/packages/aux-files/linux-libre/5.7-i686.conf, gnu/packages/aux-files/linux-libre/5.7-x86_64.conf: Delete files. * Makefile.am (AUX_FILES): Remove them. Leo Famulari 2020-08-27linux-libre: Enable module compression for all versions....This is a follow-up of 5fe12be0dd03d1a316343549f8c131d931f21a9a. It enables module compression for all supported Linux versions. * gnu/packages/aux-files/linux-libre/4.14-arm.conf: Enable GZIP module compression. * gnu/packages/aux-files/linux-libre/4.14-i686.conf: Ditto. * gnu/packages/aux-files/linux-libre/4.14-x86_64.conf: Ditto. * gnu/packages/aux-files/linux-libre/4.19-arm.conf: Ditto. * gnu/packages/aux-files/linux-libre/4.19-arm64.conf: Ditto. * gnu/packages/aux-files/linux-libre/4.19-i686.conf: Ditto. * gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: Ditto. * gnu/packages/aux-files/linux-libre/4.4-i686.conf: Ditto. * gnu/packages/aux-files/linux-libre/4.4-x86_64.conf: Ditto. * gnu/packages/aux-files/linux-libre/4.9-i686.conf: Ditto. * gnu/packages/aux-files/linux-libre/4.9-x86_64.conf: Ditto. * gnu/packages/aux-files/linux-libre/5.4-arm.conf: Ditto. * gnu/packages/aux-files/linux-libre/5.4-arm64.conf: Ditto. * gnu/packages/aux-files/linux-libre/5.4-i686.conf: Ditto. * gnu/packages/aux-files/linux-libre/5.4-x86_64.conf: Ditto. * gnu/packages/aux-files/linux-libre/5.7-arm.conf: Ditto. * gnu/packages/aux-files/linux-libre/5.7-arm64.conf: Ditto. * gnu/packages/aux-files/linux-libre/5.7-i686.conf: Ditto. * gnu/packages/aux-files/linux-libre/5.7-x86_64.conf: Ditto. Mathieu Othacehe 2020-08-25linux-libre: Enable module compression....This commit enables GZIP compression for linux-libre kernel modules, reducing the size of linux-libre by 63% (165MB). * gnu/packages/aux-files/linux-libre/5.8-arm.conf: Enable GZ compression. * gnu/packages/aux-files/linux-libre/5.8-arm64.conf: Ditto. * gnu/packages/aux-files/linux-libre/5.8-i686.conf: Ditto. * gnu/packages/aux-files/linux-libre/5.8-x86_64.conf: Ditto. Mathieu Othacehe 2020-08-21gnu: linux-libre: Update to 5.8.2....* gnu/packages/aux-files/linux-libre/5.8-arm.conf, gnu/packages/aux-files/linux-libre/5.8-arm64.conf, gnu/packages/aux-files/linux-libre/5.8-i686.conf, gnu/packages/aux-files/linux-libre/5.8-x86_64.conf: New files. * Makefile.am (AUX_FILES): Add them. * gnu/packages/linux.scm (linux-libre-5.8): New variable. (linux-libre-version, linux-libre-pristine-source, linux-libre-source, linux-libre): Point to linux-libre-5.8*. Leo Famulari 2020-08-10gnu: linux-libre: Fix typo in the configuration for 5.7 on x86_64....* gnu/packages/aux-files/linux-libre/5.7-x86_64.conf: Fix typo. Leo Famulari 2020-08-05gnu: linux-libre: Update to 5.7.12....* gnu/packages/aux-files/linux-libre/5.7-arm.conf, gnu/packages/aux-files/linux-libre/5.7-arm64.conf, gnu/packages/aux-files/linux-libre/5.7-i686.conf, gnu/packages/aux-files/linux-libre/5.7-x86_64.conf: New files. * Makefile.am (AUX_FILES): Update accordingly. * gnu/packages/linux.scm: (linux-libre-5.7): New variable. (linux-libre-version, linux-libre-pristine-source) (linux-libre-source, linux-libre): Point to linux-libre-5.7*. Leo Famulari