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-rw-r--r--gnu/packages/bioinformatics.scm22
1 files changed, 20 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c188500620..092ecf147a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15582,10 +15582,28 @@ neural networks.")
#:phases
(modify-phases %standard-phases
(delete 'configure) ; There is no configure phase.
+ (add-after 'unpack 'patch-source
+ (lambda _
+ (substitute* "Makefile"
+ (("-c ") "-c -fPIC "))
+ #t))
+ (add-after 'build 'build-dynamic
+ (lambda _
+ (invoke "g++"
+ "-shared" "-o" "libfastahack.so"
+ "Fasta.o" "FastaHack.o" "split.o" "disorder.o")))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
- (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
- (install-file "fastahack" bin))
+ (let* ((out (assoc-ref outputs "out"))
+ (lib (string-append out "/lib"))
+ (bin (string-append out "/bin")))
+ (mkdir-p (string-append out "/include/fastahack"))
+ (for-each
+ (lambda (file)
+ (install-file file (string-append out "/include/fastahack")))
+ (find-files "." "\\.h$"))
+ (install-file "fastahack" bin)
+ (install-file "libfastahack.so" lib))
#t)))))
(home-page "https://github.com/ekg/fastahack")
(synopsis "Indexing and sequence extraction from FASTA files")