diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5015069a1d..9861d84a29 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16229,6 +16229,43 @@ BigWig files, as well as efficient region coverage summary over intervals from both types of files.") (license license:expat))) +(define-public mudskipper + (package + (name "mudskipper") + (version "0.1.0") + (source (origin + (method url-fetch) + (uri (crate-uri "mudskipper" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1y7fnlz6irmxdmv6bxzm95w4ws4vzldlrh8npvgxmdnrz9pgb1dv")))) + (build-system cargo-build-system) + (arguments + `(#:tests? #false ;fail because the "mudskipper" crate cannot be found + #:cargo-inputs + (("rust-bio" ,rust-bio-0.39) + ("rust-bio-types" ,rust-bio-types-0.12) + ("rust-clap" ,rust-clap-2) + ("rust-coitrees" ,rust-coitrees-0.2) + ("rust-env-logger" ,rust-env-logger-0.9) + ("rust-fnv" ,rust-fnv-1) + ("rust-indicatif" ,rust-indicatif-0.16) + ("rust-libradicl" ,rust-libradicl-0.4) + ("rust-linecount" ,rust-linecount-0.1) + ("rust-log" ,rust-log-0.4) + ("rust-num-cpus" ,rust-num-cpus-1) + ("rust-rust-htslib" ,rust-rust-htslib-0.38)))) + (native-inputs + (list cmake pkg-config)) + (inputs + (list zlib xz)) + (home-page "https://github.com/OceanGenomics/mudskipper") + (synopsis "Convert genomic alignments to transcriptomic BAM/RAD files.") + (description "Mudskipper is a tool for projecting genomic alignments to +transcriptomic coordinates.") + (license license:bsd-3))) + (define-public r-ascat (package (name "r-ascat") |