diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4bed2e4fe8..a363298386 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2366,6 +2366,40 @@ sequencing data and the end result are tables of UMI-unique DamID and CEL-Seq counts.") (license license:expat))) +(define-public python-snaptools + (package + (name "python-snaptools") + (version "1.4.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "snaptools" version)) + (sha256 + (base32 + "1s5373g5jjbshh3q39zy7dlxr7nda6ksxq9d1gw46h82c4fsmfbn")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-future + python-h5py + python-louvain + python-numpy + python-pybedtools + python-pysam)) + (home-page "https://github.com/r3fang/SnapTools") + (synopsis "Tools for processing snap files" ) + (description + "@code{SnapTools} can operate on snap files the following types of +operations: + +@itemize +@item index the reference genome before alignment; +@item align reads to the corresponding reference genome; +@item pre-process by convert pair-end reads into fragments, checking the + mapping quality score, alingment and filtration; +@item create the cell-by-bin matrix. +@end itemize") + (license license:asl2.0))) + (define-public python-bioframe (package (name "python-bioframe") |