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| -rw-r--r-- | gnu/packages/statistics.scm | 57 |
1 files changed, 57 insertions, 0 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index a689d14f2e..8eed0767e0 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2173,6 +2173,63 @@ It includes functions for posterior analysis, data storage, model checking, comparison and diagnostics.") (license license:asl2.0))) +(define-public python-pymc + (package + (name "python-pymc") + (version "5.5.0") + (source (origin + (method git-fetch) ; no tests in PyPI + (uri (git-reference + (url "https://github.com/pymc-devs/pymc") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "077xigv3lfcn9fqc14rsnam4v95fmqk2wpzfrgj08vg8m7f69wdj")))) + (build-system pyproject-build-system) + (arguments + (list #:tests? #f ; tests are too computationally intensive + #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'versioneer + (lambda _ + (with-output-to-file "setup.cfg" + (lambda () + (display "\ +[versioneer] +VCS = git +style = pep440 +versionfile_source = pymc/_version.py +versionfile_build = pymc/_version.py +tag_prefix = +parentdir_prefix = pymc- +"))) + (invoke "versioneer" "install") + (substitute* "setup.py" + (("versioneer.get_version\\(\\)") + (string-append "\"" #$version "\""))))) + ;; To create the compiledir for tests. + (add-before 'check 'write-permissions + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "HOME" "/tmp"))))))) + (native-inputs (list python-pytest-cov python-versioneer)) + (propagated-inputs (list python-arviz + python-cachetools + python-cloudpickle + python-fastprogress + python-numpy + python-pandas + python-pytensor + python-scipy + python-typing-extensions)) + (home-page "https://github.com/pymc-devs/pymc") + (synopsis "Library for probabilistic programming in Python") + (description + "PyMC (formerly PyMC3) is a Python package for Bayesian statistical +modeling focusing on advanced Markov chain Monte Carlo (MCMC) and variational +inference (VI) algorithms.") + (license license:asl2.0))) + (define-public python-patsy (package (name "python-patsy") |