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-rw-r--r--gnu/packages/bioinformatics.scm17
1 files changed, 16 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 03bb3599d2..f6349cfb8f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1774,6 +1774,10 @@ distribution, coverage uniformity, strand specificity, etc.")
;; systems.
#:tests? ,(string=? (or (%current-system) (%current-target-system))
"x86_64-linux")
+ #:modules ((ice-9 ftw)
+ (ice-9 regex)
+ (guix build gnu-build-system)
+ (guix build utils))
#:make-flags (list "LIBCURSES=-lncurses"
(string-append "prefix=" (assoc-ref %outputs "out")))
#:phases
@@ -1798,7 +1802,18 @@ distribution, coverage uniformity, strand specificity, etc.")
(let ((lib (string-append (assoc-ref outputs "out") "/lib")))
(mkdir-p lib)
(copy-file "libbam.a" (string-append lib "/libbam.a"))))
- (alist-delete 'configure %standard-phases)))))
+ (alist-cons-after
+ 'install 'install-headers
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((include (string-append (assoc-ref outputs "out")
+ "/include/samtools/")))
+ (mkdir-p include)
+ (for-each (lambda (file)
+ (copy-file file (string-append include
+ (basename file))))
+ (scandir "." (lambda (name) (string-match "\\.h$" name))))
+ #t))
+ (alist-delete 'configure %standard-phases))))))
(native-inputs `(("pkg-config" ,pkg-config)))
(inputs `(("ncurses" ,ncurses)
("perl" ,perl)