diff options
| -rw-r--r-- | gnu/packages/bioconductor.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fce157a516..e534b33555 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -24,6 +24,7 @@ #:use-module (guix download) #:use-module (guix build-system r) #:use-module (gnu packages) + #:use-module (gnu packages base) #:use-module (gnu packages bioinformatics) #:use-module (gnu packages cran) #:use-module (gnu packages compression) @@ -4433,3 +4434,31 @@ at the start or end of each splice variant. The software includes functions for splice event prediction, quantification, visualization and interpretation.") (license license:artistic2.0))) + +(define-public r-rhisat2 + (package + (name "r-rhisat2") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Rhisat2" version)) + (sha256 + (base32 + "1d1gwl8l2z8kzfvkp1s8vfrh6jbq9ha25dplpf9g62qqa8a46hga")))) + (properties `((upstream-name . "Rhisat2"))) + (build-system r-build-system) + (native-inputs + `(("which" ,which))) + (propagated-inputs + `(("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-sgseq" ,r-sgseq))) + (home-page "https://github.com/fmicompbio/Rhisat2") + (synopsis "R Wrapper for HISAT2 sequence aligner") + (description + "This package provides an R interface to the HISAT2 spliced short-read +aligner by Kim et al. (2015). The package contains wrapper functions to +create a genome index and to perform the read alignment to the generated +index.") + (license license:gpl3))) |