diff options
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d1e251f89b..1287307033 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -14408,6 +14408,34 @@ analysis, differential node analysis (differential coexpression analysis), network and metabolic pathways view.") (license license:gpl3+))) +(define-public r-bioqc + (package + (name "r-bioqc") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BioQC" version)) + (sha256 + (base32 + "04akp94p0d0zid55m1b1k3qlw7iq914pcg57lihgj3pa92n1sc5l")))) + (properties `((upstream-name . "BioQC"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-edger" ,r-edger) + ("r-rcpp" ,r-rcpp))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://accio.github.io/BioQC/") + (synopsis "Detect tissue heterogeneity in expression profiles with gene sets") + (description + "BioQC performs quality control of high-throughput expression data based +on tissue gene signatures. It can detect tissue heterogeneity in gene +expression data. The core algorithm is a Wilcoxon-Mann-Whitney test that is +optimised for high performance.") + (license license:gpl3+))) + (define-public r-tximeta (package (name "r-tximeta") |