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| -rw-r--r-- | gnu/packages/bioconductor.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d46c86db13..b1cd1f22cd 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9082,6 +9082,43 @@ It has function interfaces for: @end itemize") (license license:expat))) +(define-public r-modstrings + (package + (name "r-modstrings") + (version "1.18.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Modstrings" version)) + (sha256 + (base32 "1jjawwkvdx02ss2vw4ah2b8psgxr01z6r1rkr2pnkmrp2ma7ygks")))) + (properties `((upstream-name . "Modstrings"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics + r-biostrings + r-crayon + r-genomicranges + r-iranges + r-s4vectors + r-stringi + r-stringr + r-xvector)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/Modstrings") + (synopsis "Working with modified nucleotide sequences") + (description + "Representing nucleotide modifications in a nucleotide sequence is +usually done via special characters from a number of sources. This represents +a challenge to work with in R and the Biostrings package. The Modstrings +package implements this functionallity for RNA and DNA sequences containing +modified nucleotides by translating the character internally in order to work +with the infrastructure of the Biostrings package. For this the +@code{ModRNAString} and @code{ModDNAString} classes and derivates and +functions to construct and modify these objects despite the encoding issues +are implemenented. In addition the conversion from sequences to list like +location information (and the reverse operation) is implemented as well.") + (license license:artistic2.0))) + (define-public r-motifrg (package (name "r-motifrg") |