diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 20 |
1 files changed, 7 insertions, 13 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b96514c2e4..82044d8115 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7428,7 +7428,7 @@ Cuffdiff or Ballgown programs.") (define-public taxtastic (package (name "taxtastic") - (version "0.8.11") + (version "0.9.2") (source (origin ;; The Pypi version does not include tests. (method git-fetch) @@ -7438,15 +7438,13 @@ Cuffdiff or Ballgown programs.") (file-name (git-file-name name version)) (sha256 (base32 - "1sv8mkg64jn7zdwf1jj71c16686yrwxk0apb1l8sjszy9p166g0p")))) + "1k6wg9ych1j3srnhdny1y4470qlhfg730rb3rm3pq7l7gw62vmgb")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (add-after 'unpack 'prepare-directory (lambda _ - ;; The git checkout must be writable for tests. - (for-each make-file-writable (find-files ".")) ;; This test fails, but the error is not caught by the test ;; framework, so the tests fail... (substitute* "tests/test_taxit.py" @@ -7455,20 +7453,16 @@ Cuffdiff or Ballgown programs.") ;; This version file is expected to be created with git describe. (mkdir-p "taxtastic/data") (with-output-to-file "taxtastic/data/ver" - (lambda () (display ,version))) - #t)) - (add-after 'unpack 'python37-compatibility - (lambda _ - (substitute* "taxtastic/utils.py" - (("import csv") "import csv, errno") - (("os.errno") "errno")) - #t)) + (lambda () (display ,version))))) (replace 'check ;; Note, this fails to run with "-v" as it tries to write to a ;; closed output stream. (lambda* (#:key tests? #:allow-other-keys) (when tests? - (invoke "python" "-m" "unittest"))))))) + (invoke "python" "-m" "unittest")))) + ;; This fails because it cannot find psycopg2 even though it is + ;; available. + (delete 'sanity-check)))) (propagated-inputs `(("python-sqlalchemy" ,python-sqlalchemy) ("python-decorator" ,python-decorator) |