guix - Wojtek's customized Guix

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td colspan='3' class='logmsg'> * gnu/packages/python-xyz.scm (python-awkward): New variable. Change-Id: Ie4f9b12d3662b9029f6e042f9c3a4d547073a6e7 2024-05-05gnu: Add python-awkward-cpp.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-awkward-cpp): New variable. Change-Id: I68f7e314aa6b575eb7135aa5308c327d5f6bf3ea 2024-05-05gnu: Add python-scikit-build-core.Ricardo Wurmus * gnu/packages/python-science.scm (python-scikit-build-core): New variable. Change-Id: If234d19d720afe88f6893bdd36fcc4955a45c5d3 2024-05-05gnu: python-distributed: Update to 2024.4.2.Ricardo Wurmus * gnu/packages/python-science.scm (python-distributed): Update to 2024.4.2. [propagated-inputs]: Add python-dask-expr. [arguments]: Adjust tests. Change-Id: I9d3b45d14ae052f3a5a5dec3587bc01d13e4b71f 2024-05-05gnu: Add python-dask-expr.Ricardo Wurmus * gnu/packages/python-science.scm (python-dask-expr): New variable. Change-Id: I691593ab713fe865c771aa68b5521c4c10cc58f6 2024-05-05gnu: python-partd: Update to 1.4.1.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-partd): Update to 1.4.1. [propagated-inputs]: Remove python-blosc. Change-Id: I3aff28899339f9ffaa47b6f5c81e0e68ce660963 2024-05-05gnu: python-dask: Update to 2024.4.2.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-dask): Update to 2024.4.2. [arguments]: Disable a few tests. Change-Id: I759ddee2ec49fbf74f368c3313f7215906b0e5a2 2024-05-05gnu: python-tables: Update to 3.7.0.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-tables): Update to 3.7.0. [propagated-inputs]: Add python-packaging and python-py-cpuinfo. Change-Id: I8653bef9a07bb898933b249aad92ddb2b79b8d85 2024-05-05gnu: python-pyarrow: Build with ORC support.Ricardo Wurmus * gnu/packages/databases.scm (python-pyarrow)[propagated-inputs]: Add apache-orc. [arguments]: Set PYARROW_WITH_ORC variable. Change-Id: Ic35cd1db75349ecb51d35815d710d8ca3a303b00 2024-05-05gnu: apache-arrow: Build with ORC.Ricardo Wurmus * gnu/packages/databases.scm (apache-arrow)[arguments]: Set options needed to build with ORC support; remove unused options -DBENCHMARK_ENABLE_GTEST_TESTS=OFF and -DARROW_GLOG=ON. [inputs]: Add apache-orc. Change-Id: Icabe6e3a73478c8464ea1e8efc103899da8e5a86 2024-05-05gnu: Add apache-orc.Ricardo Wurmus * gnu/packages/databases.scm (apache-orc): New variable. Change-Id: I9e7df4a03a5d2f258ff44d9705f539f9fc925a99 2024-05-05gnu: python-pandas-stub: Update to 2.1.1.230928.Ricardo Wurmus This is a follow-up to commit ff2d0ecfca87450c82df8d74666261b1c19cbe66. * gnu/packages/python-science.scm (python-pandas-stub): Update to 2.1.1.230928. Change-Id: I2e8ce18bd25399b467a6ff2a6fb846f8bb969e4c 2024-05-05gnu: python-tabulate: Update to 0.9.0.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-tabulate): Update to 0.9.0. [build-system]: Use pyproject-build-system. Change-Id: If360e5be6433b35308b76bd1284bb6ddb74008e8 2024-05-05gnu: python-pandas-2: Fix version.Ricardo Wurmus * gnu/packages/python-science.scm (python-pandas-2)[arguments]: Write version string to "_version.py", not "_version_meson.py" to avoid reporting the version as "0+unknown". Change-Id: I1a18814e37c023102714326bc8bd505705234205 2024-05-05gnu: python-scikit-learn: Update to 1.4.2.Ricardo Wurmus * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.4.2. [native-inputs]: Replace python-cython-0.29.35 with python-cython-3. Change-Id: Id8be08f931bf250a8ecb8bc46b44d7148b4c4a2f 2024-05-05gnu: python-cython-3: Update to 3.0.8.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-cython-3): Update to 3.0.8. Change-Id: I9129a7837cefea0b95b0a3c3cdf73997d91f7484 2024-05-05gnu: python-pyjanitor: Update to 0.27.0.Ricardo Wurmus * gnu/packages/python-science.scm (python-pyjanitor): Update to 0.27.0. [arguments]: Disable a few more tests; add phase 'pandas-compat. Change-Id: Ia8891971a687342166f30ded11f9e341a208d95e 2024-05-05gnu: tadbit: Use G-expression.Ricardo Wurmus * gnu/packages/bioinformatics.scm (tadbit)[arguments]: Use G-expression. Change-Id: I4fe4afc41eb3442f243b0e415ddcb363be36ce7f 2024-05-05gnu: r-reticulate: Update to 1.36.1.Ricardo Wurmus * gnu/packages/cran.scm (r-reticulate): Update to 1.36.1. Change-Id: I7119ca05b8411209c617be318806b3ff4bc3b530 2024-05-05gnu: python-xarray: Disable tests that are known to fail.Ricardo Wurmus * gnu/packages/python-science.scm (python-xarray)[arguments]: Disable two tests. Change-Id: I70954173e0aca5a377cf19476e9390a97febadc7 2024-05-05gnu: python-pandas: Default to version 2.x.Ricardo Wurmus * gnu/packages/python-science.scm (python-pandas): Define as alias for python-pandas-2; rename existing definition to... (python-pandas-1): ...this new variable. Change-Id: If359e3b2d42c683d7d0152b1757bbc5a979c999b 2024-05-05gnu: python-scikit-opt: Add missing input.Ricardo Wurmus * gnu/packages/python-science.scm (python-scikit-opt)[propagated-inputs]: Add python-pytorch. Change-Id: I037cc43bedeaebb05bf038c0bca72919f8c27c40 2024-05-05gnu: python-plastid: Replace nose with pytest.Ricardo Wurmus * gnu/packages/bioinformatics.scm (python-plastid)[native-inputs]: Replace python-nose with python-pytest. Change-Id: Ie0e5362d2304d3af0bcb1405fa0c1ad36fb2ace6 2024-05-05gnu: Add python-metacells.Marco Baggio * gnu/packages/bioinformatics.scm (python-metacells): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I4fc760dc4317bde79c815f441ad0cc453248990a 2024-05-05gnu: Add python-cvxpy.Marco Baggio * gnu/packages/python-science.scm (python-cvxpy): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I440ab3768cbc4e78364dc31cf9484effd9670f49 2024-05-05gnu: Add python-ecos.Marco Baggio * gnu/packages/python-science.scm (python-ecos): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I83d9b746f5f3563f417efc5d18911f2eb04f201c 2024-05-05gnu: Add python-osqp.Marco Baggio * gnu/packages/python-science.scm (python-osqp): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: Id6f1665505469fd6543046636b82d0730b319df3 2024-05-05gnu: Add python-qdldl.Marco Baggio * gnu/packages/python-science.scm (python-qdldl): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I523ecb2292c9b514b548e2130d0d43bb77317b00 2024-05-05gnu: Add python-scs.Marco Baggio * gnu/packages/python-science.scm (python-scs): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I6c5ecdac4b558aab4b8ee396dff1dfc9cdec07f0 2024-05-05gnu: Add python-fastcluster.Marco Baggio * gnu/packages/python-science.scm (python-fastcluster): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: Ifc5229a4d00f581eb358a1f41fc3479fd1c33c2e 2024-05-05gnu: Add python-clarabel.Ricardo Wurmus * gnu/packages/python-science.scm (python-clarabel): New variable. Change-Id: I28459162460ca9bf9e9557122f611c677afadc27 2024-05-05gnu: Add rust-amd-0.2.Ricardo Wurmus * gnu/packages/crates-io.scm (rust-amd-0.2): New variable. Change-Id: I28d4e0d6bd9b590ca61df9152f91641408e48e5a 2024-05-05gnu: Add python-param.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-param): New variable. Change-Id: Idad928488d7c306c969b4484a3cd22661c41d488 2024-05-05gnu: Add python-multiscale-spatial-image.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-multiscale-spatial-image): New variable. Change-Id: I05a0b3a93091148917fade831faefb88c13bbc6f 2024-05-05gnu: Add python-colorcet.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-colorcet): New variable. Change-Id: I8b3f6d9a132d028f56330308b034d263e162f0f9 2024-05-05gnu: Add python-nbmake.Ricardo Wurmus * gnu/packages/python-check.scm (python-nbmake): New variable. Change-Id: If062d0e34329e99b5bb87588e7ddf149c65bfdfb 2024-05-05gnu: Add python-pyct.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-pyct): New variable. Change-Id: Ia207d5aa9d66fd2bf3616049c042fbb12e50928d 2024-05-05gnu: Add rust-blas-0.22.Ricardo Wurmus * gnu/packages/crates-io.scm (rust-blas-0.22): New variable. Change-Id: Ic7bcbde20b6552659255f4ff11adde8fb1eeea45 2024-05-05gnu: Add rust-blas-sys-0.7.Ricardo Wurmus * gnu/packages/crates-io.scm (rust-blas-sys-0.7): New variable. Change-Id: Ibfa2ab61256527e34e9ff9a8f7d871990ffbeda7 2024-05-05gnu: Add rust-lapack-0.19.Ricardo Wurmus * gnu/packages/crates-io.scm (rust-lapack-0.19): New variable. Change-Id: I2c32db5e4028432e030005c7ee16773d0f052d21 2024-05-05gnu: Add rust-lapack-sys-0.14.Ricardo Wurmus * gnu/packages/crates-io.scm (rust-lapack-sys-0.14): New variable. Change-Id: Id8fa94a06c231f3864040d2c428ac81042803adf 2024-05-05gnu: Add python-xarray-schema.Ricardo Wurmus * gnu/packages/python-science.scm (python-xarray-schema): New variable. Change-Id: I4ca650f2c2872698fc22392add169f44b9e2e035 2024-05-05gnu: python-xarray-datatree: Add missing input.Ricardo Wurmus * gnu/packages/python-science.scm (python-xarray-datatree)[native-inputs]: Add python-setuptools-scm. Change-Id: I86a7280ba687385edb15f30dae1a20e3811a0beb 2024-05-05gnu: python-pooch: Update to 1.8.1.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-pooch): Update to 1.8.1. [arguments]: Enable tests, but not all of them. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-pytest and python-setuptools-scm. [propagated-inputs]: Add python-platformdirs; remove python-appdirs and python-packaging. Change-Id: I3a0f73db5c0d78c9cee24c73402e9b1e34e26b4a 2024-05-05gnu: Add python-dask-image.Ricardo Wurmus * gnu/packages/python-xyz.scm (python-dask-image): New variable. Change-Id: I77c22bba69d73ce39681064bfdcc05b2b360ea26 2024-05-05gnu: Revmoe go-github-com-syndtr-goleveldb.Sharlatan Hellseher This package is a duplicate to go-github-com-syndtr-goleveldb-leveldb. * gnu/packages/ipfs.scm: Revmoe (gnu packages syncthing) module. (kubo) [inputs]: Replace go-github-com-syndtr-goleveldb with go-github-com-syndtr-goleveldb-leveldb. * gnu/packages/syncthing.scm (go-github-com-syndtr-goleveldb): Remove variable. Change-Id: I8641a18a3d97f570f3bbbd849f7dabdea4e41b01 2024-05-05gnu: go-go-uber-org-atomic: Update to 1.11.0.Sharlatan Hellseher The upstream suggested to update to the latest version to resolve failing tests on RISK-V, see <https://github.com/uber-go/atomic/issues/164>. * gnu/packages/golang-xyz.scm (go-go-uber-org-atomic): Update to 1.11.0. [arguments]: <#:tests?>: Enable tests on all platforms. Change-Id: I6df21cfaebb9e4d4a609e93f3fe4bfea2bff5e8d


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