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authorRicardo Wurmus <rekado@elephly.net>2020-08-10 16:49:20 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-08-10 21:58:38 +0200
commit698673699e0ec501bca3abf1d455670a49cbf90e (patch)
tree65f62d76c59f75affd3d9bf0758463c79f6920a9 /gnu
parent2d4c25f0164a6752852ba07dc7b1687fa656bf25 (diff)
downloadguix-698673699e0ec501bca3abf1d455670a49cbf90e.tar.gz
guix-698673699e0ec501bca3abf1d455670a49cbf90e.zip
gnu: Add clapack.
* gnu/packages/maths.scm (clapack): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/maths.scm56
1 files changed, 56 insertions, 0 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 3a746bd712..232dec5ecc 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -809,6 +809,62 @@ problems in numerical linear algebra.")
(license (license:non-copyleft "file://LICENSE"
"See LICENSE in the distribution."))))
+(define-public clapack
+ (package
+ (name "clapack")
+ (version "3.2.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "http://www.netlib.org/clapack/clapack-"
+ version "-CMAKE.tgz"))
+ (sha256
+ (base32
+ "0nnap9q1mv14g57dl3vkvxrdr10k5w7zzyxs6rgxhia8q8mphgqb"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; These tests use a lot of stack variables and segfault without
+ ;; lifting resource limits.
+ (add-after 'unpack 'disable-broken-tests
+ (lambda _
+ (substitute* "TESTING/CMakeLists.txt"
+ (("add_lapack_test.* xeigtstz\\)") ""))
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (libdir (string-append out "/lib"))
+ (f2cinc (string-append out "/include/libf2c")))
+ (mkdir-p f2cinc)
+ (display (getcwd))
+ (for-each (lambda (file)
+ (install-file file libdir))
+ '("SRC/liblapack.a"
+ "F2CLIBS/libf2c/libf2c.a"
+ "TESTING/MATGEN/libtmglib.a"
+ "BLAS/SRC/libblas.a"))
+ (for-each (lambda (file)
+ (install-file file f2cinc))
+ (cons "F2CLIBS/libf2c/arith.h"
+ (find-files (string-append "../clapack-"
+ ,version "-CMAKE/F2CLIBS/libf2c")
+ "\\.h$")))
+ (copy-recursively (string-append "../clapack-"
+ ,version "-CMAKE/INCLUDE")
+ (string-append out "/include"))
+ #t))))))
+ (home-page "https://www.netlib.org/clapack/")
+ (synopsis "Numerical linear algebra library for C")
+ (description
+ "The CLAPACK library was built using a Fortran to C conversion utility
+called f2c. The entire Fortran 77 LAPACK library is run through f2c to obtain
+C code, and then modified to improve readability. CLAPACK's goal is to
+provide LAPACK for someone who does not have access to a Fortran compiler.")
+ (license (license:non-copyleft "file://LICENSE"
+ "See LICENSE in the distribution."))))
+
(define-public scalapack
(package
(name "scalapack")
ly and assume a single substituter....The daemon had a mechanism that allows it to handle a list of substituters and try them sequentially; this removes it. * nix/scripts/substitute.in: Remove. * nix/local.mk (nodist_pkglibexec_SCRIPTS): Remove. * config-daemon.ac: Don't output 'nix/scripts/substitute'. * nix/libstore/build.cc (SubstitutionGoal)[subs, sub, hasSubstitute]: Remove. [tryNext]: Make private. (SubstitutionGoal::SubstitutionGoal, SubstitutionGoal::init): Remove now unneeded initializers. (SubstitutionGoal::tryNext): Adjust to assume a single substituter: call 'amDone' upfront when we couldn't find substitutes. (SubstitutionGoal::tryToRun): Adjust to run 'guix substitute' via 'settings.guixProgram'. (SubstitutionGoal::finished): Call 'amDone(ecFailed)' upon failure instead of setting 'state' to 'tryNext'. * nix/libstore/globals.hh (Settings)[substituters]: Remove. * nix/libstore/local-store.cc (LocalStore::~LocalStore): Adjust to handle a single substituter. (LocalStore::startSubstituter): Remove 'path' parameter. Adjust to invoke 'settings.guixProgram'. Don't refer to 'run.program', which no longer exists. (LocalStore::querySubstitutablePaths): Adjust for 'runningSubstituters' being a singleton instead of a list. (LocalStore::querySubstitutablePathInfos): Likewise, and remove 'substituter' parameter. * nix/libstore/local-store.hh (RunningSubstituter)[program]: Remove. (LocalStore)[runningSubstituters]: Remove. [runningSubstituter]: New field. [querySubstitutablePathInfos]: Remove 'substituter' parameter. [startSubstituter]: Remove 'substituter' parameter. * nix/nix-daemon/guix-daemon.cc (main): Remove references to 'settings.substituters'. * nix/nix-daemon/nix-daemon.cc (performOp): Ignore the user's "build-use-substitutes" value when 'settings.useSubstitutes' is false. Ludovic Courtès 2019-09-08daemon: Run 'guix offload' directly....* nix/scripts/offload.in: Remove. * nix/local.mk (nodist_pkglibexec_SCRIPTS) [BUILD_DAEMON_OFFLOAD]: Remove 'scripts/offload'. * config-daemon.ac: Don't output 'nix/scripts/offload'. * build-aux/pre-inst-env.in: Don't set 'NIX_BUILD_HOOK'. * nix/libstore/build.cc (HookInstance::HookInstance): Run 'guix offload'. (DerivationGoal::tryBuildHook): Remove reference to 'NIX_BUILD_HOOK'. * nix/nix-daemon/guix-daemon.cc (main) [HAVE_DAEMON_OFFLOAD_HOOK]: Don't set 'NIX_BUILD_HOOK'. * nix/nix-daemon/nix-daemon.cc (performOp) [!HAVE_DAEMON_OFFLOAD_HOOK]: Leave 'settings.useBuildHook' unchanged. Ludovic Courtès 2019-09-08daemon: Run 'guix perform-download' directly....* nix/scripts/download.in: Remove. * nix/local.mk (nodist_pkglibexec_SCRIPTS): Remove 'scripts/download'. * config-daemon.ac: Don't output 'nix/scripts/download'. * nix/libstore/builtins.cc (builtinDownload): Invoke 'guix perform-download' directly. Ludovic Courtès 2019-09-08daemon: Run 'guix authenticate' directly....* nix/scripts/authenticate.in: Remove. * nix/local.mk (nodist_pkglibexec_SCRIPTS): Remove scripts/authenticate. * config-daemon.ac: Don't output 'nix/scripts/authenticate'. * nix/libstore/local-store.cc (runAuthenticationProgram): Run 'guix authenticate'. Ludovic Courtès 2019-09-08daemon: Invoke 'guix gc --list-busy' instead of 'list-runtime-roots'....* nix/scripts/list-runtime-roots.in: Remove. * guix/store/roots.scm (%proc-directory): New variable. (proc-file-roots, proc-exe-roots, proc-cwd-roots) (proc-fd-roots, proc-maps-roots, proc-environ-roots) (referenced-files, canonicalize-store-item, busy-store-items): New procedures, taken from 'list-runtime-roots.in'. * nix/libstore/globals.hh (Settings)[guixProgram]: New field. * nix/libstore/globals.cc (Settings::processEnvironment): Initialize 'guixProgram'. * nix/libstore/gc.cc (addAdditionalRoots): Drop code related to 'NIX_ROOT_FINDER'. Run "guix gc --list-busy". * nix/local.mk (nodist_pkglibexec_SCRIPTS): Remove 'scripts/list-runtime-roots'. * config-daemon.ac: Don't output nix/scripts/list-runtime-roots. * build-aux/pre-inst-env.in: Don't set 'NIX_ROOT_FINDER'. Set 'GUIX'. * doc/guix.texi (Invoking guix gc): Document '--list-busy'. * guix/scripts/gc.scm (show-help, %options): Add "--list-busy". (guix-gc)[list-busy]: New procedure. Handle the 'list-busy' action. Ludovic Courtès 2019-08-30daemon: Don't reply on 'st_blocks'....Ported by Ludovic Courtès <ludo@gnu.org> from <https://github.com/NixOS/nix/commit/a2c4fcd5e9782dc8d2998773380c7171ee53b813>. * nix/libstore/gc.cc (LocalStore::removeUnusedLinks): Use 'st.st_size' instead of 'st.st_blocks * 512'. * nix/libutil/util.cc (_deletePath): Likewise. Eelco Dolstra 2019-06-13daemon: Replace "illegal" by "invalid" in error messages....* nix/libstore/build.cc (parseReferenceSpecifiers): Replace "illegal" by "invalid". * nix/libstore/globals.cc (Settings::pack): Likewise. * nix/libstore/store-api.cc (checkStoreName): Likewise. Ludovic Courtès 2019-03-13Remove traces of "GuixSD"....* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Remove mentions of "GuixSD". * gnu/bootloader/grub.scm (install-grub-efi): Likewise. * gnu/build/vm.scm (make-iso9660-image): Change default #:volume-id to "Guix_image". (initialize-hard-disk): Search for the "Guix_image" label. * gnu/ci.scm (system-test-jobs, tarball-jobs): Remove "GuixSD". * gnu/installer/newt/welcome.scm (run-welcome-page): Likewise. * gnu/packages/audio.scm (supercollider)[description]: Likewise. * gnu/packages/curl.scm (curl): Likewise. * gnu/packages/emacs.scm (emacs): Likewise. * gnu/packages/gnome.scm (network-manager): Likewise. * gnu/packages/julia.scm (julia): Likewise. * gnu/packages/linux.scm (alsa-plugins): Likewise. (powertop, wireless-regdb): Likewise. * gnu/packages/package-management.scm (guix): Likewise. * gnu/packages/polkit.scm (polkit): Likewise. * gnu/packages/tex.scm (texlive-bin): Likewise. * gnu/services/base.scm (file-systems->fstab): Likewise. * gnu/services/cups.scm (%cups-activation): Likewise. * gnu/services/mail.scm (%dovecot-activation): Likewise. * gnu/services/messaging.scm (prosody-configuration)[log]: Likewise. * gnu/system/examples/vm-image.tmpl (vm-image-motd): Likewise. * gnu/system/install.scm (installation-os)[file-systems]: Change root file system label to "Guix_image". * gnu/system/mapped-devices.scm (check-device-initrd-modules): Remove "GuixSD". * gnu/system/vm.scm (system-docker-image): Likewise. (system-disk-image)[root-label]: Change to "Guix_image". * gnu/tests/install.scm (run-install): Remove "GuixSD". * guix/modules.scm (guix-module-name?): Likewise. * nix/libstore/optimise-store.cc: Likewise. Ludovic Courtès 2019-02-06daemon: Emit a 'build-succeeded' event in check mode....Until now, something like "guix build sed -v1 --check" would not get a 'build-succeeded' event, which in turn meant that the spinner would not be erased upon build completion. * nix/libstore/build.cc (DerivationGoal::registerOutputs): When 'buildMode' is bmCheck and 'settings.printBuildTrace' emit a "@ build-succeeded" trace upon success. * tests/store.scm ("build-succeeded trace in check mode"): New test. Ludovic Courtès 2019-02-04daemon: Add "/guix" to default 'nixLibexecDir'....This makes it easier to run the uninstalled daemon. * nix/local.mk (libstore_a_CPPFLAGS): Append "/guix" to NIX_LIBEXEC_DIR. * build-aux/pre-inst-env.in (NIX_LIBEXEC_DIR): Adjust comment. * nix/libstore/builtins.cc (builtinDownload): Remove SUBDIR and its use. * nix/libstore/local-store.cc (runAuthenticationProgram): Ditto. * nix/libstore/gc.cc (addAdditionalRoots): Remove "/guix" prefix. * nix/nix-daemon/guix-daemon.cc (main): Ditto. Ludovic Courtès 2019-02-04daemon: Remove the 'NIX_SUBSTITUTERS' environment variable....* nix/libstore/globals.cc (Settings:update): Remove changes to 'substituters'. * nix/nix-daemon/guix-daemon.cc (main): Set 'settings.substituters' directly instead of changing the 'NIX_SUBSTITUTERS' environment variable. * build-aux/pre-inst-env.in: Remove reference to 'NIX_SUBSTITUTERS'. Ludovic Courtès 2019-02-04daemon: Remove unused 'NIX_DATA_DIR' environment variable....* nix/libstore/globals.hh (Settings)[nixDataDir]: Remove. * nix/libstore/globals.cc (Settings:processEnvironment): Remove setting of 'nixDataDir'. * nix/local.mk (libstore_a_CPPFLAGS): Remove '-DNIX_DATA_DIR'. Ludovic Courtès 2019-02-04daemon: Rename 'NIX_STATE_DIR' and 'NIX_DB_DIR' environment variables....Fixes <https://bugs.gnu.org/22459>. Reported by Jeff Mickey <j@codemac.net>. * guix/config.scm.in (%state-directory): Change NIX_STATE_DIR to GUIX_STATE_DIRECTORY. (%store-database-directory): Change NIX_DB_DIR to GUIX_DATABASE_DIRECTORY. * nix/libstore/globals.cc (Settings::processEnvironment): Likewise. * guix/self.scm (make-config.scm): Likewise. * build-aux/build-self.scm (make-config.scm): Likewise. * build-aux/test-env.in: Likewise. * tests/derivations.scm ("derivation #:leaked-env-vars"): Likewise. * tests/guix-build.sh (GUIX_DAEMON_SOCKET): Likewise. * tests/guix-daemon.sh (socket): Likewise. Ludovic Courtès 2018-12-16daemon: Use unbranded phrases in comments and messages....* nix/libstore/build.cc, nix/libstore/globals.cc, nix/libstore/gc.cc, nix/libstore/local-store.cc, nix/libstore/optimise-store.cc, nix/libstore/store-api.cc, nix/libutil/archive.cc, nix/nix-daemon/nix-daemon.cc: Replace "Nix store" by "store", and "Nix daemon" by "build daemon". Ludovic Courtès 2018-11-14daemon: Install 'authenticate' script under LIBEXECDIR/guix....That way it is handled in the same way as other helper scripts. * nix/scripts/guix-authenticate.in: Rename to... * nix/scripts/authenticate.in: ... this. * config-daemon.ac: Adjust accordingly. * nix/local.mk (libstore_a_CPPFLAGS): Remove -DOPENSSL_PATH. (nodist_libexec_SCRIPTS): Remove. (nodist_pkglibexec_SCRIPTS): New variable. * nix/nix-daemon/guix-daemon.cc (main): Remove 'setenv' call for "PATH". * nix/libstore/local-store.cc (runAuthenticationProgram): New function. (LocalStore::exportPath, LocalStore::importPath): Use it instead of 'runProgram' and OPENSSL_PATH. Ludovic Courtès 2018-10-15daemon: Support multiplexed build output....This allows clients to tell whether output comes from the daemon or, if it comes from a builder, from which builder it comes. The latter is particularly useful when MAX-BUILD-JOBS > 1. * nix/libstore/build.cc (DerivationGoal::tryBuildHook) (DerivationGoal::startBuilder): Print the child's PID in "@ build-started" traces. (DerivationGoal::handleChildOutput): Define 'prefix', pass it to 'writeToStderr'. * nix/libstore/globals.cc (Settings:Settings): Initialize 'multiplexedBuildOutput'. (Settings::update): Likewise. * nix/libstore/globals.hh (Settings)[multiplexedBuildOutput]: New field. Update 'printBuildTrace' documentation. * nix/libstore/worker-protocol.hh (PROTOCOL_VERSION): Bump to 0.163. * nix/nix-daemon/nix-daemon.cc (performOp) <wopSetOptions>: Special-case "multiplexed-build-output" and remove "use-ssh-substituter". * guix/store.scm (set-build-options): Add #:multiplexed-build-output? and honor it. (%protocol-version): Bump to #x163. * tests/store.scm ("multiplexed-build-output"): New test. fixlet Ludovic Courtès 2018-10-02daemon: Remove unused 'Settings' fields....* nix/libstore/globals.hh (Settings)[sshSubstituterHosts] [useSshSubstituter, logServers, enableImportNative]: Remove fields. * nix/libstore/globals.cc (Settings::Settings, Settings::update): Remove references to these. Ludovic Courtès 2018-09-27perform-download: Optionally report a "download-progress" trace....* guix/scripts/perform-download.scm (perform-download): Add #:print-build-trace? and pass it to 'url-fetch'. (guix-perform-download): Define 'print-build-trace?' and pass it to 'perform-download'. * guix/build/download.scm (ftp-fetch): Add #:print-build-trace? and honor it. (url-fetch): Likewise. * nix/libstore/builtins.cc (builtinDownload): Set _NIX_OPTIONS environment variable. Ludovic Courtès 2018-09-27Add (guix status) and use it for pretty colored output....* guix/progress.scm (progress-reporter/trace): New procedure. (%progress-interval): New variable. (progress-reporter/file): Use it. * guix/scripts/build.scm (set-build-options-from-command-line): Pass #:print-extended-build-trace?. (%default-options): Add 'print-extended-build-trace?'. (guix-build): Parameterize CURRENT-TERMINAL-COLUMNS. Use 'build-status-updater'. * guix/scripts/environment.scm (%default-options): Add 'print-extended-build-trace?'. (guix-environment): Wrap body in 'with-status-report'. * guix/scripts/pack.scm (%default-options): Add 'print-build-trace?' and 'print-extended-build-trace?'. (guix-pack): Wrap body in 'with-status-report'. * guix/scripts/package.scm (%default-options, guix-package): Likewise. * guix/scripts/system.scm (%default-options, guix-system): Likewise. * guix/scripts/pull.scm (%default-options, guix-pull): Likewise. * guix/scripts/substitute.scm (progress-report-port): Don't call STOP when TOTAL is zero. (process-substitution): Add #:print-build-trace? and honor it. (guix-substitute)[print-build-trace?]: New variable. Pass #:print-build-trace? to 'process-substitution'. * guix/status.scm: New file. * guix/store.scm (set-build-options): Add #:print-extended-build-trace?; pass it into PAIRS. (%protocol-version): Bump. (protocol-version, nix-server-version): New procedures. (current-store-protocol-version): New variable. (with-store, build-things): Parameterize it. * guix/ui.scm (build-output-port): Remove. (colorize-string): Export. * po/guix/POTFILES.in: Add guix/status.scm. * tests/status.scm: New file. * Makefile.am (SCM_TESTS): Add it. * nix/libstore/worker-protocol.hh (PROTOCOL_VERSION): Bump to 0x162. * nix/libstore/build.cc (DerivationGoal::registerOutputs) (SubstitutionGoal::finished): Print a "@ hash-mismatch" trace before throwing. Ludovic Courtès 2018-06-14Remove 'guix-register' and its traces....* Makefile.am (SH_TESTS): Remove tests/guix-register.sh. * build-aux/pre-inst-env.in (GUIX_REGISTER): Remove. * gnu/build/install.scm (directives): Remove outdated comment. * gnu/build/vm.scm (root-partition-initializer): Update comment. * gnu/packages/package-management.scm (guix-register): Remove. * guix/config.scm.in (%sbindir, %guix-register-program): Remove. * guix/scripts/system.scm (install): Adjust docstring. * guix/self.scm (make-config.scm): Remove #:guix. Do not generate %sbindir and %guix-register-program. (specification->package): Remove "guix". * nix/guix-register/guix-register.cc: Remove. * nix/libstore/store-api.cc (decodeValidPathInfo): Remove. * nix/libstore/store-api.hh (decodeValidPathInfo): Remove declaration. * nix/local.mk (sbin_PROGRAMS, guix_register_SOURCES) (guix_register_CPPFLAGS, guix_register_LDFLAGS): Remove. * tests/guix-register.sh: Remove. Ludovic Courtès 2018-06-14database: 'with-database' can now initialize new databases....* nix/libstore/schema.sql: Rename to... * guix/store/schema.sql: ... this. * Makefile.am (nobase_dist_guilemodule_DATA): Add it. * nix/local.mk (%D%/libstore/schema.sql.hh): Adjust accordingly. * guix/store/database.scm (sql-schema): New variable. (sqlite-exec, initialize-database, call-with-database): New procedures. (with-database): Rewrite in terms of 'call-with-database'. * tests/store-database.scm ("new database"): New test. * guix/self.scm (compiled-guix)[*core-modules*]: Add 'schema.sql' to #:extra-files. Ludovic Courtès 2018-05-17daemon: Allow building for armhf-linux on aarch64-linux....* nix/libstore/build.cc (canBuildLocally): Allow building armhf-linux builds on aarch64-linux. (DerivationGoal::runChild) Throw error if attempting to build for armhf-linux on an unsupported platform. * doc/guix.texi (Invoking guix build): Document how to build natively for armhf-linux on aarch64-linux. Add note that on some aarch64 machines this is unsupported. Efraim Flashner 2018-03-30daemon: Remove unused schema upgrade code....* nix/libstore/local-store.cc (LocalStore): Remove upgrade code. (LocalStore::queryValidPathsOld, LocalStore::queryPathInfoOld) (LocalStore::upgradeStore6, makeMutable) (LocalStore::upgardeStore7): Remove. * nix/libstore/local-store.hh: Adjust accordingly. Ludovic Courtès 2018-03-30daemon: Remove dead code....* nix/libstore/globals.cc (Settings::loadConfFile, Settings::unpack): Remove. * nix/libstore/globals.hh: Adjust accordingly. * nix/libstore/misc.cc (queryMissing): Remove. * nix/libstore/misc.hh: Adjust accordingly. * nix/libstore/store-api.cc (followLinksToStore) (followLinksToStorePath, computeStorePathForHash): Remove. * nix/libstore/store-api.hh: Adjust accordingly. Ludovic Courtès 2018-01-11daemon: Always try to execute the builder regardless of the platform....* nix/libstore/build.cc (runChild): Move platform check after 'execve' call. Check specifically for ENOEXEC. Ludovic Courtès 2018-01-07daemon: Make libbz2 an optional dependency....* config-daemon.ac: Don't bail out when libbz2 is missing. Define 'HAVE_LIBBZ2' Automake conditional. * nix/libstore/build.cc: Wrap relevant bits in '#if HAVE_BZLIB_H'. * nix/libstore/globals.cc (Settings::Settings): 'logCompression' defaults to COMPRESSION_GZIP when HAVE_BZLIB_H is false. * nix/libstore/globals.hh (CompressionType): Make 'COMPRESSION_BZIP2' conditional on HAVE_BZLIB_H. * nix/local.mk (guix_register_LDADD, guix_daemon_LDADD): Add -lbz2 only when HAVE_LIBBZ2. * nix/nix-daemon/guix-daemon.cc (parse_opt): Ignore "bzip2" when not HAVE_BZLIB_H. Ludovic Courtès 2018-01-07daemon: Add gzip log compression....* nix/nix-daemon/guix-daemon.cc (GUIX_OPT_LOG_COMPRESSION): New macro. (options): Mark "disable-log-compression" as hidden and add "log-compression". (parse_opt): Handle GUIX_OPT_LOG_COMPRESSION. * nix/libstore/build.cc (DerivationGoal): Add 'gzLogFile'. (openLogFile): Initialize it when 'logCompression' is COMPRESSION_GZIP. (closeLogFile, handleChildOutput): Honor 'gzLogFile'. * nix/libstore/globals.hh (Settings)[compressLog]: Remove. [logCompression]: New field. (CompressionType): New enum. * nix/libstore/globals.cc (Settings::Settings): Initialize it. (update): Remove '_get' call for 'compressLog'. * nix/local.mk (guix_daemon_LDADD, guix_register_LDADD): Add -lz. * guix/store.scm (log-file): Handle '.gz' log files. * tests/guix-daemon.sh: Add test with '--log-compression=gzip'. * doc/guix.texi (Invoking guix-daemon): Adjust accordingly. * config-daemon.ac: Check for libz and zlib.h. Ludovic Courtès