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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-06-22 14:34:35 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-06-22 14:39:03 +0200 |
| commit | c89afe7516a45854d5b0975c24478c47e21fefd7 (patch) | |
| tree | 0782642b2d11b60a8c6e8e59d1393dc1b22ce1d3 /gnu/packages | |
| parent | 277ac1f242084a7a5048cd07390c04cf277f80c3 (diff) | |
| download | guix-c89afe7516a45854d5b0975c24478c47e21fefd7.tar.gz guix-c89afe7516a45854d5b0975c24478c47e21fefd7.zip | |
gnu: Add r-rgreat.
* gnu/packages/bioconductor.scm (r-rgreat): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index cfdd3d1c5e..002f4a0edb 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8089,3 +8089,31 @@ metrics, such as the elbow method and Horn's parallel analysis, which has relevance for data reduction in single-cell RNA-seq (scRNA-seq) and high dimensional mass cytometry data.") (license license:gpl3))) + +(define-public r-rgreat + (package + (name "r-rgreat") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "rGREAT" version)) + (sha256 + (base32 + "0n8dw9ibb2klsczcxvvinpi9l53w8cs436i0c8w2jmramayl593v")))) + (properties `((upstream-name . "rGREAT"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomicranges" ,r-genomicranges) + ("r-getoptlong" ,r-getoptlong) + ("r-iranges" ,r-iranges) + ("r-rcurl" ,r-rcurl) + ("r-rjson" ,r-rjson))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/jokergoo/rGREAT") + (synopsis "Client for GREAT analysis") + (description + "This package makes GREAT (Genomic Regions Enrichment of Annotations +Tool) analysis automatic by constructing a HTTP POST request according to +user's input and automatically retrieving results from GREAT web server.") + (license license:expat))) |