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| author | Ricardo Wurmus <rekado@elephly.net> | 2020-08-12 11:54:09 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-08-12 13:57:10 +0200 |
| commit | 06d6de773baa1a167724e5519bdd2a4a3a1ca867 (patch) | |
| tree | ed0ed2874a7e4d6551c8e1589da56092cb6689d1 /gnu/packages | |
| parent | 2fc3021790f33e86e11ebc88099f2283dc6d530e (diff) | |
| download | guix-06d6de773baa1a167724e5519bdd2a4a3a1ca867.tar.gz guix-06d6de773baa1a167724e5519bdd2a4a3a1ca867.zip | |
gnu: Add r-gaston.
* gnu/packages/cran.scm (r-gaston): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/cran.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8f888052da..e62ce5feac 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22857,3 +22857,31 @@ and contains over 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.") (license license:gpl2+))) + +(define-public r-gaston + (package + (name "r-gaston") + (version "1.5.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "gaston" version)) + (sha256 + (base32 + "1bx6iqfjb9lf3vn0z7v8wjv9m7issvqsnymm4qsgl3622s6qz6rg")))) + (properties `((upstream-name . "gaston"))) + (build-system r-build-system) + (inputs `(("zlib" ,zlib))) + (propagated-inputs + `(("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rcppparallel" ,r-rcppparallel))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://cran.r-project.org/web/packages/gaston/") + (synopsis "Genetic data handling (QC, GRM, LD, PCA) and linear mixed models") + (description + "This is a package for the manipulation of genetic data (SNPs). +Computation of @dfn{genetic relationship matrix} (GRM) and dominance matrix, +@dfn{linkage disequilibrium} (LD), and heritability with efficient algorithms +for linear mixed models (AIREML).") + (license license:gpl3))) |