diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2022-06-12 22:50:29 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-06-12 22:51:23 +0200 |
| commit | 0006a9a83a568715f7f30fbb9abb4c78da06a886 (patch) | |
| tree | 8814d1f1924e7bd7fb7d691080f3dcf061244e19 /gnu/packages | |
| parent | eec1724ea6cf47027d408e13e59f268b4530877f (diff) | |
| download | guix-0006a9a83a568715f7f30fbb9abb4c78da06a886.tar.gz guix-0006a9a83a568715f7f30fbb9abb4c78da06a886.zip | |
gnu: Add r-deconvr.
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 75d2b97bba..9788285707 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2188,6 +2188,50 @@ set analyses, and can deal with repeated or longitudinal data.") biological sequences.") (license license:gpl3))) +(define-public r-deconvr + (package + (name "r-deconvr") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "deconvR" version)) + (sha256 + (base32 + "091z3lncamscsvzj63zzbw7dr7vnkn0jwfkm5ljq4112w4rxgrm3")))) + (properties `((upstream-name . "deconvR"))) + (build-system r-build-system) + (propagated-inputs + (list r-assertthat + r-biocgenerics + r-data-table + r-dplyr + r-e1071 + r-foreach + r-genomicranges + r-iranges + r-magrittr + r-mass + r-matrixstats + r-methylkit + r-nnls + r-quadprog + r-rsq + r-s4vectors + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/BIMSBbioinfo/deconvR") + (synopsis "Simulation and deconvolution of omic profiles") + (description + "This package provides a collection of functions designed for analyzing +deconvolution of the bulk sample(s) using an atlas of reference omic signature +profiles and a user-selected model. Users are given the option to create or +extend a reference atlas and,also simulate the desired size of the bulk +signature profile of the reference cell types. The package includes the +cell-type-specific methylation atlas and, Illumina Epic B5 probe ids that can +be used in deconvolution. Additionally, we included @code{BSmeth2Probe}, to +make mapping WGBS data to their probe IDs easier.") + (license license:artistic2.0))) + (define-public r-decoupler (package (name "r-decoupler") |