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authorRicardo Wurmus <rekado@elephly.net>2023-12-28 11:20:34 +0100
committerRicardo Wurmus <rekado@elephly.net>2024-01-01 14:35:16 +0100
commita72c6ba19a51a3eed9c7198f4b358849dd7543be (patch)
treeb22836c3384e53f752041350b1644f40a29501ca /gnu/packages/cdrom.scm
parent25d7dbd61c5420e105c36eef9b3583c87088bb40 (diff)
downloadguix-a72c6ba19a51a3eed9c7198f4b358849dd7543be.tar.gz
guix-a72c6ba19a51a3eed9c7198f4b358849dd7543be.zip
gnu: r-genomeinfodb: Update to 1.38.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.4. Change-Id: Icdd7237e7a4d15a6b9554fca77423148d6f7438e
Diffstat (limited to 'gnu/packages/cdrom.scm')
0 files changed, 0 insertions, 0 deletions
9 +0200'>2023-03-30gnu: cross-base: Removed useless inputs to xhurd-core-headers....* gnu/packages/cross-base.scm (cross-kernel-headers*): Remove them. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Josselin Poiret 2023-03-30gnu: cross-base: Add cross arguments to hurd derivatives....* gnu/packages/cross-base.scm (cross-kernel-headers*): Add --build and --host to xhurd-headers and xhurd-minimal. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Josselin Poiret 2023-03-30gnu: cross-base: Factor out cross-mig....* gnu/packages/cross-base.scm (cross-mig): New exported procedure. (cross-gnumach-headers): New procedure. (cross-kernel-headers*): Factor them out. (cross-libc*): Use them there. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Josselin Poiret 2023-03-30gnu: cross-base: Use gexps for 'cross-gcc-arguments'....* gnu/packages/cross-base.scm (cross-gcc-arguments): Switch to gexps. Ludovic Courtès 2023-03-30gnu: glibc: Work around broken GNU Mach header detection....* gnu/packages/base.scm (%glibc/hurd-configure-flags): New variable. (glibc)[arguments]: Use it. (glibc/hurd-headers)[arguments]: likewise. * gnu/packages/cross-base.scm (cross-libc*): Likewise. Co-authored-by: Josselin Poiret <dev@jpoiret.xyz> Ludovic Courtès 2023-03-04gnu: cross-base: Inherit arguments from 'mig'....That way, 'xmig' inherits the 'avoid-perl-dependency' build phase. * gnu/packages/hurd.scm (mig)[arguments]: In 'avoid-perl-dependency', use 'find-files' to locate the "mig" executable(s). * gnu/packages/cross-base.scm (cross-kernel-headers*)[xmig]: Use 'substitute-keyword-arguments'. Ludovic Courtès 2023-03-04gnu: cross-base: Remove input labels for GNU Mach and MiG....* gnu/packages/cross-base.scm (cross-kernel-headers*)[xgnumach-headers] [xmig]: Remove input labels; use gexps and 'modify-inputs'. [xgnumach-headers-name]: New variable. Ludovic Courtès 2023-02-16gnu: Remove unneeded module imports....* gnu/packages/abiword.scm, * gnu/packages/ada.scm, * gnu/packages/agda.scm, * gnu/packages/backup.scm, * gnu/packages/barrier.scm, * gnu/packages/bioinformatics.scm, * gnu/packages/bootstrap.scm, * gnu/packages/bqn.scm, * gnu/packages/c.scm, * gnu/packages/chemistry.scm, * gnu/packages/coq.scm, * gnu/packages/cross-base.scm, * gnu/packages/databases.scm, * gnu/packages/emacs-xyz.scm, * gnu/packages/enlightenment.scm, * gnu/packages/games.scm, * gnu/packages/geo.scm, * gnu/packages/ghostscript.scm, * gnu/packages/gl.scm, * gnu/packages/golang.scm, * gnu/packages/jami.scm, * gnu/packages/java-maths.scm, * gnu/packages/kde-frameworks.scm, * gnu/packages/kde-plasma.scm, * gnu/packages/language.scm, * gnu/packages/libreoffice.scm, * gnu/packages/linphone.scm, * gnu/packages/lisp.scm, * gnu/packages/llvm.scm, * gnu/packages/machine-learning.scm, * gnu/packages/minetest.scm, * gnu/packages/monitoring.scm, * gnu/packages/nfs.scm, * gnu/packages/ocr.scm, * gnu/packages/opencl.scm, * gnu/packages/pdf.scm, * gnu/packages/python-xyz.scm, * gnu/packages/racket.scm, * gnu/packages/rust.scm, * gnu/packages/syncthing.scm, * gnu/packages/syndication.scm, * gnu/packages/telegram.scm, * gnu/packages/vulkan.scm, * gnu/packages/web-browsers.scm, * gnu/packages/web.scm, * gnu/packages/webkit.scm: Remove some unecessary module imports. Efraim Flashner 2023-01-03gnu: cross-base: Standardize API to use keyword arguments....This makes it possible to invoke the procedures with a single or fewer optional arguments. * gnu/packages/cross-base.scm (contains-keyword?): New procedure. (cross-binutils): Dispatch to either... (cross-binutils/deprecated): ... this renamed procedure or ... (cross-binutils*): ... this new procedure. (cross-kernel-headers, cross-libc/deprecated): Likewise. Maxim Cournoyer 2022-12-07gnu: cross-base: Fix some indentation problems....* gnu/packages/cross-base.scm (cross-binutils): Fix indentation. (cross-kernel-headers): Align 'inherit' fields of nested package variables. (cross-gcc): Fix indentation. Maxim Cournoyer 2022-09-20gnu: cross: Add default configure-flags....Reported by Arun Isaac <arunisaac@systemreboot.net>. * gnu/packages/cross-base.scm (cross)[arguments]: Add a default for configure-flags so '--target=' is always added. Efraim Flashner 2022-05-30gnu: GCC: Add cross environment variables patch to GCC 12....* gnu/packages/patches/gcc-12-cross-environment-variables.patch : New file. * gnu/local.mk (dist_patch_DATA): Add gcc-12-cross-environment-variables.patch. * gnu/packages/cross-base.scm (cross-gcc)[source](patches): Apply the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Morgan Smith 2022-05-25Move (gnu platform) and (gnu platforms ...) to guix/....* gnu/platform.scm: * gnu/platforms/arm.scm: * gnu/platforms/hurd.scm: * gnu/platforms/mips.scm: * gnu/platforms/powerpc.scm: * gnu/platforms/riscv.scm: * gnu/platforms/s390.scm: * gnu/platforms/x86.scm: Move to guix/. * Makefile.am: * doc/guix.texi (Porting to a New Platform): * etc/release-manifest.scm: * gnu/ci.scm: * gnu/image.scm: * gnu/local.mk: * gnu/packages/bioinformatics.scm: * gnu/packages/bootstrap.scm: * gnu/packages/cross-base.scm: * gnu/packages/instrumentation.scm: * gnu/packages/linux.scm: * gnu/system/image.scm: * gnu/system/images/hurd.scm: * gnu/system/images/novena.scm: * gnu/system/images/pine64.scm: * gnu/system/images/pinebook-pro.scm: * gnu/system/images/rock64.scm: * guix/scripts/build.scm: * guix/scripts/system.scm: * guix/self.scm: Update (gnu platform...) to (guix platform...). Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Josselin Poiret 2022-05-22linux: Remove system->linux-architecture procedure....* gnu/packages/linux.scm (system->linux-architecture): Remove it. (make-linux-libre-headers*, make-linux-libre*): Adapt them. * guix/build-system/linux-module.scm (system->arch): Adapt it. * gnu/packages/instrumentation.scm (uftrace): Ditto. * gnu/packages/cross-base.scm (cross-kernel-headers): Ditto. * gnu/packages/bioinformatics.scm (ncbi-vdb): Ditto. * doc/guix.texi (Porting to a new platform): Update it. Mathieu Othacehe 2022-03-16gnu: cross-base: Don't specify mingw --with-newlib...Previous to this commit, we added a --with-newlib configure flag to cross-gcc when cross-newlib?, but cross-newlib? is true only when target-mingw?. It turns out that specifying --with-newlib disables the GLIBCXX_CROSSCONFIG check, which is used to detect _GLIBCXX_HAVE__WFOPEN, which is required in C++17 std::filesystem for mingw-w64 systems. Additional context: In gnu/packages/embedded.scm, --with-newlib is specified explicitly when we're actually using newlib, which seems like the correct way of handling it. Situation in other distros: - Debian's gcc-mingw-w64 doesn't specify --with-newlib - Fedora's mingw64-gcc-c++ explicitly specifies --without-newlib Chesterton's fence: Chatting with janneke, who originally added this mechanism, reveals that this flag is not only no longer required, but also that removing it doesn't break his guile-mingw builds. See IRC logs of #guix for 2022-02-15. * gnu/packages/cross-base.scm (cross-gcc-arguments): Don't check for and specify --with-newlib. (cross-libc): Check for mingw and use mingw-w64 directly. (cross-newlib?): Remove, unexport. (native-libc): Remove. Carl Dong 2022-02-07gnu: Disable compressed debug sections for mingw-w64...The newly introduced --enable-compressed-debug-section=all configure flag in the base binutils package makes the mingw-w64 build system unusable. For example: $ guix build --target=x86_64-w64-mingw32 hello and $ guix build mingw-w64-x86_64-winpthreads Will fail to build with an error: "x86_64-w64-mingw32-ld: final link failed: bad value" Turning off this flag seems to fix the problem, but perhaps it'd also be worthwhile to investigate the root cause. * gnu/packages/cross-base.scm (cross-binutils): When building for mingw targets, append "--enable-compressed-debug-section=no" to configure flags. Carl Dong