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authorRicardo Wurmus <rekado@elephly.net>2020-06-13 00:58:14 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-06-13 01:19:56 +0200
commit201902bc0561073d5d2ce5150d0094ab15a40726 (patch)
treec37b61982033f715e5d4f570ae6638afc99f0e94 /build-aux/compile-all.scm
parent568c3929b6bcfdfbc1e937cc2c12d7d318ac63e8 (diff)
downloadguix-201902bc0561073d5d2ce5150d0094ab15a40726.tar.gz
guix-201902bc0561073d5d2ce5150d0094ab15a40726.zip
gnu: r-sgseq: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.22.0. [native-inputs]: Add r-knitr.
Diffstat (limited to 'build-aux/compile-all.scm')
0 files changed, 0 insertions, 0 deletions
ass='msg-tooltip'>Fixes <https://bugs.gnu.org/43744>. * etc/guix-install.sh (chk_sys_nscd): New function to check if the service 'nscd is running, otherwise suggest to install distribution-wide. Signed-off-by: Ludovic Courtès <ludo@gnu.org> zimoun 2020-10-16guix-install.sh: Add symbolic links for supported shell completions....Fixes <https://bugs.gnu.org/43744>. * etc/guix-install.sh (sys_create_shell_completion): New function to add system wide all the symlinks for supported shell completions. Signed-off-by: Ludovic Courtès <ludo@gnu.org> zimoun 2020-09-17guix-install.sh: Support OpenRC....* etc/guix-install.sh (chk_init_sys): Detect OpenRC. (sys_enable_guix_daemon): Install & enable the Guix daemon on such systems. * etc/openrc/guix-daemon.in: New file. * nix/local.mk: Add a rule for it. (openrcservicedir, nodist_openrcservice_DATA): New variables. (CLEANFILES, EXTRA_DIST): Add them. * .gitignore: Ignore etc/openrc/guix-daemon. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Morgan Smith 2020-09-17guix-install.sh: Be POSIX-compliant....* etc/guix-install.sh (guix_get_bin_list): Call grep with an extended regular expression instead of a non-POSIX Perl regular expression. (sys_create_store): Remove ‘--warning=no-timestamp’ argument to tar. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Morgan Smith 2020-09-09guix-install.sh: Quote the OpenPGP key URL....Without quotes, zsh fails with "no matches found" as it tries to interpret the question mark. * etc/guix-install.sh (chk_gpg_keyring): Enclose URL in single quotes. Ludovic Courtès 2020-07-16guix-install.sh: Make sure /etc/profile is sourced....New users regularly report missing newly-installed programmes and icons. * etc/guix-install.scm (main): Tell users to log out & back in. Tobias Geerinckx-Rice 2020-07-16guix-install.sh: Suggest running gpg as root....The original example regularly prevented new users from installing Guix at all. * etc/guix-install.scm (chk_gpg_keyring): Suggest ‘sudo -i gpg’. Tobias Geerinckx-Rice 2020-07-14etc: Enable mount unit only if it exists....* etc/guix-install.sh (sys_enable_guix_daemon): Enable gnu-store.mount only if it was actually installed. Reported by peanutbutterandc on #guix. Tobias Geerinckx-Rice 2020-05-23guix-install.sh: Fix ‘systemctl not found’ error message at probe....* etc/guix-install.sh (chk_init_sys): Redirect systemctl errors to /dev/null. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Vincent Legoll 2020-05-23guix-install.sh: Add xz to requirements....* etc/guix-install.sh (REQUIRE): Add xz to requirements list. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Vincent Legoll 2020-05-17etc: Install mount unit only if it exists....This follows up on 1a1faa78b0498fbb71f1533beb4b65817c1d3f2a, and avoids the (non-fatal) error seen in <https://issues.guix.gnu.org/41356>. /gnu/store will remain writable on new foreign distribution installations until the next release. * etc/guix-install.sh (sys_enable_guix_daemon): Check for ‘gnu-store.mount’ presence before trying to cp it. Update forgotten copyright header. Tobias Geerinckx-Rice 2020-05-16etc: Add a systemd unit to bind-mount @storedir@ read-only....* etc/gnu-store.mount.in: New file. * nix/local.mk (nodist_systemdservice_DATA): Add it. (etc/%.mount): New rule for it. * etc/guix-install.sh (sys_enable_guix_daemon): Install it. * doc/guix.texi (Binary Installation): Document it. * .gitignore: Ignore changes to it. Tobias Geerinckx-Rice 2020-03-22guix-install.sh: /etc/profile.d/guix.sh sources ~/.guix-profile/etc/profile....* etc/guix-install.sh (sys_create_init_profile): Source ~/.guix-profile/etc/profile instead of running 'guix package --search-paths=prefix' Ludovic Courtès 2020-03-22guix-install.sh: Add a trailing colon to 'INFOPATH'....Fixes <https://bugs.gnu.org/39984>. Suggested by Adam Porter <adam@alphapapa.net>. * etc/guix-install.sh (sys_create_init_profile): Add a trailing colon to 'INFOPATH'. Ludovic Courtès 2020-03-11guix-install.sh: Install SysV init script....* etc/guix-install.sh (sys_enable_guix_daemon): Install SysV init script. Danny Milosavljevic 2020-01-26guix-install.sh: Correctly treat empty or unset $XDG_DATA_DIRS...If $XDG_DATA_DIRS is unset, default value of "/usr/local/share:/usr/share" is used according to XDG Base Directory Specification. However, /etc/profile.d/guix.sh treats this value as empty list when appending its own directory, so after installing Guix on the system, launchers such as Rofi stop searching for .desktop files in /usr/share/applications/ and can't launch applications other than those installed with Guix. This patch fixes the bug in generated /etc/profile.d/guix.sh * etc/guix-install.sh (sys_create_init_profile): Use default value of /usr/local/share:/usr/share/ before appending if $XDG_DATA_DIRS is not set. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alexander Krotov 2020-01-26guix-install.sh: Create /etc/profile.d if it does not exist...* etc/guix-install.sh (sys_create_init_profile): Add code to create /etc/profile.d if it somehow does not exist; the function still carries on because it is possible that /etc/profile is still configured to read the *.sh files from /etc/profile.d, if they exist. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Prafulla Giri 2020-01-26guix-install.sh: Export INFOPATH to contain updated guix info-pages...* etc/guix-install.sh (sys_create_init_profile): Export INFOPATH to include the updated info-pages from ~/.config/guix/current/share/info. This also makes sure that both /usr/bin/info and $GUIX_PROFILE/bin/info can read guix info pages without throwing "no menu item 'guix' in node dir(Top)" error. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Prafulla Giri 2020-01-17guix-install.sh: Create an init profile during installation...Create an init profile (/etc/profile.d/guix.sh) during installation for better integration with foreign distros. This file, read by login-shells sets a few environment variables (PATH, GUIX_PROFILE, GUIX_LOCALE, along with XDG_DATA_DIRS) and makes guix-installed packages readily available for the users. Other environment variables, as listed by `guix package --search-paths=prefix`, are also exported. Checks are in place to prevent the init profile from needlessly polluting the user's environment. * etc/guix-install.sh (sys_create_init_profile): New function to create /etc/profile.d/guix.sh init profile. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Prafulla Giri 2019-12-04guix-install.sh: Use a deterministic umask....Users with strict umasks (e.g. 0077) would end up with an unreadable /gnu (mode 0700) and no way to run guix. Reported by A. <@aaap:matrix.org> on #guix. * etc/guix-install.sh (main): Set umask before installing anything. Tobias Geerinckx-Rice