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| author | Eric Bavier <bavier@member.fsf.org> | 2016-03-17 09:35:38 -0500 |
|---|---|---|
| committer | Eric Bavier <bavier@member.fsf.org> | 2016-05-12 19:59:52 +0000 |
| commit | c8378eea10fa57c207550978dcf2998f3fc6b81c (patch) | |
| tree | 5978ffae3bfe46dfb5de0d5a957e66f6659ffa40 | |
| parent | b8d9c93bde155af13e633f8b84b56372c2044c43 (diff) | |
| download | guix-c8378eea10fa57c207550978dcf2998f3fc6b81c.tar.gz guix-c8378eea10fa57c207550978dcf2998f3fc6b81c.zip | |
gnu: Add hdf5-openmpi.
* gnu/packages/maths.scm (hdf5-openmpi): New variable.
| -rw-r--r-- | gnu/packages/maths.scm | 28 |
1 files changed, 27 insertions, 1 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index df21d5ea5b..fce03ac5b8 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -442,6 +442,33 @@ extremely large and complex data collections.") (license (license:x11-style "http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING")))) +(define-public hdf5-parallel-openmpi + (package (inherit hdf5) + (name "hdf5-parallel-openmpi") + (inputs + `(("mpi" ,openmpi) + ,@(package-inputs hdf5))) + (arguments + (substitute-keyword-arguments `(#:configure-flags '("--enable-parallel") + ,@(package-arguments hdf5)) + ((#:phases phases) + `(modify-phases ,phases + (add-before 'check 'patch-tests + (lambda _ + ;; OpenMPI's mpirun will exit with non-zero status if it + ;; detects an "abnormal termination", i.e. any process not + ;; calling MPI_Finalize(). Since the test is explicitely + ;; avoiding MPI_Finalize so as not to have at_exit and thus + ;; H5C_flush_cache from being called, mpirun will always + ;; complain, so turn this test off. + (substitute* "testpar/Makefile" + (("(^TEST_PROG_PARA.*)t_pflush1(.*)" front back) + (string-append front back "\n"))) + (substitute* "tools/h5diff/testph5diff.sh" + (("/bin/sh") (which "sh"))) + #t)))))) + (synopsis "Management suite for data with parallel IO support"))) + (define-public nlopt (package (name "nlopt") @@ -480,7 +507,6 @@ common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.") (license license:lgpl2.1+))) - ;; For a fully featured Octave, users are strongly recommended also to install ;; the following packages: texinfo, less, ghostscript, gnuplot. (define-public octave |