;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 John Soo <jsoo1@asu.edu>
;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages dhall)
#:use-module (gnu packages)
#:use-module (gnu packages haskell-xyz)
#:use-module (gnu packages haskell-check)
#:use-module (gnu packages haskell-crypto)
#:use-module (gnu packages haskell-web)
#:use-module (guix download)
#:use-module (guix build-system haskell)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages))
(define-public dhall
(package
(name "dhall")
(version "1.41.2")
(source (origin
(method url-fetch)
(uri (hackage-uri "dhall" version))
(sha256
(base32
"14m5rrvkid76qnvg0l14xw1mnqclhip3gjrz20g1lp4fd5p056ka"))))
(build-system haskell-build-system)
(properties '((upstream-name . "dhall")))
(inputs (list ghc-aeson
ghc-aeson-pretty
ghc-ansi-terminal
ghc-atomic-write
ghc-base16-bytestring
ghc-case-insensitive
ghc-cborg
ghc-cborg-json
ghc-contravariant
ghc-data-fix
ghc-diff
ghc-dotgen
ghc-either
ghc-half
ghc-hashable
ghc-indexed-traversable
ghc-lens-family-core
ghc-megaparsec
ghc-mmorph
ghc-network-uri
ghc-optparse-applicative
ghc-parsers
ghc-parser-combinators
ghc-prettyprinter
ghc-prettyprinter-ansi-terminal
ghc-pretty-simple
ghc-profunctors
ghc-repline
ghc-serialise
ghc-scientific
ghc-text-manipulate
ghc-text-short
ghc-th-lift-instances
ghc-unordered-containers
ghc-uri-encode
ghc-vector
ghc-cryptohash-sha256
ghc-http-types
ghc-http-client
ghc-http-client-tls))
(nati-rw-r--r-- gnu/packages/bioinformatics.scm 5
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7b41c06bf6..816e64aedb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9726,9 +9726,10 @@ The following file formats are supported: `(#:configure-flags (list (string-append "-Dlibgff_DIR=" (assoc-ref %build-inputs "libgff") "/lib") + "-DCMAKE_CXX_FLAGS=\"-DHAVE_NUMERIC_LIMITS128=1\"" "-Dlibgff_FOUND=TRUE" "-DTBB_FOUND=TRUE" - "-DTBB_VERSION=2020.3" + ,(string-append "-DTBB_VERSION=" (package-version tbb-for-salmon)) "-DTBB_LIBRARIES=tbb -ltbbmalloc" "-DFETCHED_PUFFERFISH=TRUE" "-DUSE_SHARED_LIBS=TRUE") @@ -9822,7 +9823,7 @@ The following file formats are supported: (sha256 (base32 "0qb4a2nl1d59qasr17sslgxnkjd5kbk5mns4cjshrmsvkrqp995n")))) - ("tbb" ,tbb) + ("tbb" ,tbb-for-salmon) ("libstadenio-for-salmon" ,libstadenio-for-salmon) ("xz" ,xz) ("zlib" ,zlib))) |