;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus ;;; Copyright © 2016 Efraim Flashner ;;; ;;; This file is part of GNU Guix. ;;; ;;; GNU Guix is free software; you can redistribute it and/or modify it ;;; under the terms of the GNU General Public License as published by ;;; the Free Software Foundation; either version 3 of the License, or (at ;;; your option) any later version. ;;; ;;; GNU Guix is distributed in the hope that it will be useful, but ;;; WITHOUT ANY WARRANTY; without even the implied warranty of ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ;;; GNU General Public License for more details. ;;; ;;; You should have received a copy of the GNU General Public License ;;; along with GNU Guix. If not, see . (define-module (gnu packages julia) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix download) #:use-module (guix utils) #:use-module (guix git-download) #:use-module (guix build-system gnu) #:use-module (gnu packages) #:use-module (gnu packages algebra) #:use-module (gnu packages base) #:use-module (gnu packages compression) #:use-module (gnu packages elf) #:use-module (gnu packages gcc) #:use-module (gnu packages llvm) #:use-module (gnu packages libevent) #:use-module (gnu packages libunwind) #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) ; mpfr #:use-module (gnu packages pcre) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) #:use-module (gnu packages textutils) #:use-module (gnu packages tls) #:use-module (gnu packages version-control) #:use-module (gnu packages wget) #:use-module (ice-9 match)) (define libuv-julia (let ((commit "52d72a52cc7ccd570929990f010ed16e2ec604c8") (revis# GNU Guix --- Functional package management for GNU # Copyright © 2012, 2015-2016, 2024 Ludovic Courtès <ludo@gnu.org> # # This file is part of GNU Guix. # # GNU Guix is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 3 of the License, or (at # your option) any later version. # # GNU Guix is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. # Define some files/folders needed for the tests. output="t-download-$$" test_git_repo="$(mktemp -d)" output_dir="t-archive-dir-$$" trap 'rm -rf "$test_git_repo" ; rm -f "$output" ; rm -rf "$output_dir"' EXIT # # Test the `guix download' command-line utility. # guix download --version # Make sure it fails here. guix download http://does.not/exist && false guix download unknown://some/where && false guix download /does-not-exist && false # This one should succeed. guix download "file://$abs_top_srcdir/README" # And this one, without the URI scheme. guix download "$abs_top_srcdir/README" # This one too, even if it cannot talk to the daemon. GUIX_DAEMON_SOCKET="/nowhere" guix download -o "$output" \ "file://$abs_top_srcdir/README" cmp "$output" "$abs_top_srcdir/README" # This one should fail. guix download "file:///does-not-exist" "file://$abs_top_srcdir/README" && false # Test git support with local repository. # First, create a dummy git repo in the temporary directory. ( # Avoid interference with user config. GIT_CONFIG_GLOBAL=/dev/null GIT_CONFIG_SYSTEM=/dev/null export GIT_CONFIG_SYSTEM GIT_CONFIG_GLOBAL cd $test_git_repo git init touch test git config user.name "User" git config user.email "user@domain" git add test git commit -m "Commit" git tag -a -m "v1" v1 ) # Extract commit number. commit=$((cd $test_git_repo && git log) | head -n 1 | cut -f2 -d' ') # We expect that guix hash is working properly or at least that the output of # 'guix download' is consistent with 'guix hash'. expected_hash=$(guix hash -rx $test_git_repo) # Test the different options for option in "" "--commit=$commit" "--commit=v1" "--branch=master" do command_output="$(guix download --git $option "file://$test_git_repo")" computed_hash="$(echo $command_output | cut -f2 -d' ')" store_path="$(echo $command_output | cut -f1 -d' ')" [ "$expected_hash" = "$computed_hash" ] diff -r -x ".git" $test_git_repo $store_path done # Should fail. guix download --git --branch=non_existent "file://$test_git_repo" && false # Same but download to file instead of store. guix download --git "file://$test_git_repo" -o $output_dir diff -r -x ".git" $test_git_repo $output_dir exit 0 in/ldconfig -p". Since ldconfig is not ;; used in Guix, we patch runtime_ccall.cpp to contain a static map. (lambda* (#:key inputs #:allow-other-keys) (use-modules (ice-9 match)) (substitute* "src/runtime_ccall.cpp" (("jl_read_sonames.*;") (string-join (map (match-lambda ((input libname soname) (string-append "sonameMap[\"" libname "\"] = " "\"" (assoc-ref inputs input) "/lib/" soname "\";"))) '(("libc" "libc" "libc.so.6") ("pcre2" "libpcre2-8" "libpcre2-8.so") ("mpfr" "libmpfr" "libmpfr.so") ("openblas" "libblas" "libopenblas.so") ("arpack-ng" "libarpack" "libarpack.so") ("lapack" "liblapack" "liblapack.so") ("libgit2" "libgit2" "libgit2.so") ("gmp" "libgmp" "libgmp.so") ("openlibm" "libopenlibm" "libopenlibm.so") ("openspecfun" "libopenspecfun" "libopenspecfun.so") ("fftw" "libfftw3" "libfftw3_threads.so") ("fftwf" "libfftw3f" "libfftw3f_threads.so")))))) (substitute* "base/fft/FFTW.jl" (("const libfftw = Base.libfftw_name") (string-append "const libfftw = \"" (assoc-ref inputs "fftw") "/lib/libfftw3_threads.so" "\"")) (("const libfftwf = Base.libfftwf_name") (string-append "const libfftwf = \"" (assoc-ref inputs "fftwf") "/lib/libfftw3f_threads.so" "\""))) (substitute* "base/math.jl" (("const libm = Base.libm_name") (string-append "const libm = \"" (assoc-ref inputs "openlibm") "/lib/libopenlibm.so" "\"")) (("const openspecfun = \"libopenspecfun\"") (string-append "const openspecfun = \"" (assoc-ref inputs "openspecfun") "/lib/libopenspecfun.so" "\""))) (substitute* "base/pcre.jl" (("const PCRE_LIB = \"libpcre2-8\"") (string-append "const PCRE_LIB = \"" (assoc-ref inputs "pcre2") "/lib/libpcre2-8.so" "\""))) #t)) (add-before 'build 'fix-include-and-link-paths (lambda* (#:key inputs #:allow-other-keys) ;; LIBUTF8PROC is a linker flag, not a build target. It is ;; included in the LIBFILES_* variable which is used as a ;; collection of build targets and a list of libraries to link ;; against. (substitute* "src/flisp/Makefile" (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\): \\$\\(OBJS\\) \\$\\(LIBFILES_release\\)") "$(BUILDDIR)/$(EXENAME): $(OBJS) $(LLT_release)") (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)-debug: \\$\\(DOBJS\\) \\$\\(LIBFILES_debug\\)") "$(BUILDDIR)/$(EXENAME)-debug: $(DOBJS) $(LLT_debug)")) ;; The REPL must be linked with libuv. (substitute* "ui/Makefile" (("JLDFLAGS \\+= ") (string-append "JLDFLAGS += " (assoc-ref %build-inputs "libuv") "/lib/libuv.so "))) (substitute* "base/Makefile" (("\\$\\(build_includedir\\)/uv-errno.h") (string-append (assoc-ref inputs "libuv") "/include/uv-errno.h"))) #t)) (add-before 'build 'replace-default-shell (lambda _ (substitute* "base/client.jl" (("/bin/sh") (which "sh"))) #t)) (add-after 'unpack 'hardcode-paths (lambda _ (substitute* "base/interactiveutil.jl" (("`which") (string-append "`" (which "which"))) (("`wget") (string-append "`" (which "wget")))) #t)) (add-before 'check 'disable-broken-tests (lambda _ (substitute* "test/choosetests.jl" ;; These tests fail, probably because some of the input ;; binaries have been stripped and thus backtraces don't look ;; as expected. (("\"backtrace\",") "") (("\"compile\",") "") (("\"replutil\",") "") (("\"cmdlineargs\",") "") ;; FIXME: This test fails with the following error: ;; Error in testset file: ;; Test Failed ;; Expression: download("ba\0d", "good") ;; Expected: ArgumentError ;; Thrown: Base.UVError (("\"file\",") "")) #t))) #:make-flags (list (string-append "prefix=" (assoc-ref %outputs "out")) ;; Passing the MARCH flag is necessary to build binary substitutes for ;; the supported architectures. ,(match (or (%current-target-system) (%current-system)) ("x86_64-linux" "MARCH=x86-64") ("i686-linux" "MARCH=pentium4") ("aarch64-linux" "MARCH=armv8-a") ;; Prevent errors when querying this package on unsupported ;; platforms, e.g. when running "guix package --search=" (_ "MARCH=UNSUPPORTED")) "CONFIG_SHELL=bash" ;needed to build bundled libraries "USE_SYSTEM_DSFMT=0" ;not packaged for Guix and upstream has no ;build system for a shared library. "USE_SYSTEM_LAPACK=1" "USE_SYSTEM_BLAS=1" "USE_BLAS64=0" ;needed when USE_SYSTEM_BLAS=1 "USE_SYSTEM_FFTW=1" "LIBFFTWNAME=libfftw3" "LIBFFTWFNAME=libfftw3f" ;; TODO: Suitesparse does not install shared libraries, so we cannot ;; use the suitesparse package. ;; "USE_SYSTEM_SUITESPARSE=1" ;; (string-append "SUITESPARSE_INC=-I " ;; (assoc-ref %build-inputs "suitesparse") ;; "/include") "USE_GPL_LIBS=1" ;proudly "USE_SYSTEM_UTF8PROC=1" (string-append "UTF8PROC_INC=" (assoc-ref %build-inputs "utf8proc") "/include") "USE_SYSTEM_LLVM=1" "USE_LLVM_SHLIB=0" ; FIXME: fails when set to 1 "USE_SYSTEM_LIBUNWIND=1" "USE_SYSTEM_LIBUV=1" (string-append "LIBUV=" (assoc-ref %build-inputs "libuv") "/lib/libuv.so") (string-append "LIBUV_INC=" (assoc-ref %build-inputs "libuv") "/include") "USE_SYSTEM_PATCHELF=1" "USE_SYSTEM_PCRE=1" "USE_SYSTEM_OPENLIBM=1" "USE_SYSTEM_GMP=1" "USE_SYSTEM_MPFR=1" "USE_SYSTEM_ARPACK=1" "USE_SYSTEM_LIBGIT2=1" "USE_SYSTEM_OPENSPECFUN=1"))) (inputs `(("llvm" ,llvm) ("arpack-ng" ,arpack-ng) ("coreutils" ,coreutils) ;for bindings to "mkdir" and the like ("lapack" ,lapack) ("openblas" ,openblas) ;Julia does not build with Atlas ("libunwind" ,libunwind-for-julia) ("openlibm" ,openlibm) ("openspecfun" ,openspecfun) ("libgit2" ,libgit2) ("fftw" ,fftw) ("fftwf" ,fftwf) ("fortran" ,gfortran) ("libuv" ,libuv-julia) ("pcre2" ,pcre2) ("utf8proc" ,utf8proc) ("mpfr" ,mpfr) ("wget" ,wget) ("which" ,which) ("zlib" ,zlib) ("gmp" ,gmp) ("virtualenv" ,python2-virtualenv) ;; FIXME: The following inputs are downloaded from upstream to allow us ;; to use the lightweight Julia release tarball. Ideally, these inputs ;; would eventually be replaced with proper Guix packages. ;; TODO: run "make -f contrib/repackage_system_suitesparse4.make" to copy static lib ("suitesparse" ,(origin (method url-fetch) (uri "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-4.4.5.tar.gz") (sha256 (base32 "1jcbxb8jx5wlcixzf6n5dca2rcfx6mlcms1k2rl5gp67ay3bix43")))) ("objconv" ,(origin (method url-fetch) (uri "http://www.agner.org/optimize/objconv.zip") (sha256 (base32 "1fi7qa2sd9vb35dvkgripjf0fayzg2qmff215f8agfqfiwd1g8qs")))) ("dsfmt" ,(origin (method url-fetch) (uri (string-append "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/" "SFMT/dSFMT-src-2.2.3.tar.gz")) (sha256 (base32 "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42")))))) (native-inputs `(("openssl" ,openssl) ("perl" ,perl) ("patchelf" ,patchelf) ("pkg-config" ,pkg-config) ("python" ,python-2) ("unicode-data" ,(origin (method url-fetch) (uri "http://www.unicode.org/Public/9.0.0/ucd/UnicodeData.txt") (sha256 (base32 "13zfannnr6sa6s27ggvcvzmh133ndi38pfyxsssvjmw2s8ac9pv8")))))) ;; Julia is not officially released for ARM and MIPS. ;; See https://github.com/JuliaLang/julia/issues/10639 (supported-systems '("i686-linux" "x86_64-linux" "aarch64-linux")) (home-page "http://julialang.org/") (synopsis "High-performance dynamic language for technical computing") (description "Julia is a high-level, high-performance dynamic programming language for technical computing, with syntax that is familiar to users of other technical computing environments. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library.") (license license:expat)))