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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (test-cran)
  #:use-module (gnu packages statistics)
  #:use-module (guix import cran)
  #:use-module (guix tests)
  #:use-module (srfi srfi-1)
  #:use-module (srfi srfi-64)
  #:use-module (srfi srfi-26)
  #:use-module (ice-9 match))

(define description "
Package: My-Example
Type: Package
Title: Example package
Version: 1.2.3
Date: 2015-12-10
Author: Ricardo Wurmus
Maintainer: Guix Schmeeks <guix@gnu.org>
URL: http://gnu.org/s/my-example
Description: This is a long description
spanning multiple lines: and it could confuse the parser that this line is very long or perhaps the fact that
there is a colon : on the lines.
  And: this line continues the description.
biocViews: 0
SystemRequirements: Cairo (>= 0)
Depends: A C++11 compiler. Version 4.6.* of g++ (as
	currently in Rtools) is insufficient; versions 4.8.*, 4.9.* or
	later will be fine.
License: GPL (>= 3)
Imports: Rcpp (>= 0.11.5), proto, Scales
LinkingTo: Rcpp, BH
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-07-14 14:15:16
")

(define description-alist
  (description->alist description))

(define simple-alist
  '(("Key"        . "Value")
    ("SimpleList" . "R, Rcpp, something, whatever")
    ("BadList"    . "This is not a real list, you know?")
    ("List"       . "R (>= 2.2), BH (for no reason), GenomicRanges")))

(test-begin "cran")

(test-assert "description->alist: contains all valid keys"
  (let ((keys '("Package" "Type" "Title" "Version" "Date"
                "Author" "Maintainer" "URL" "Description"
                "SystemRequirements" "Depends" "License"
                "Imports" "biocViews" "LinkingTo"
                "NeedsCompilation" "Repository"
                "Date/Publication")))
    (lset= string=? keys (map car description-alist))))

(test-equal "listifyx: return empty list if key cannot be found"
  '()
  ((@@ (guix import cran) listify) simple-alist "Letters"))

(test-equal "listify: split comma-separated value into elements"
  '("R" "Rcpp" "something" "whatever")
  ((@@ (guix import cran) listify) simple-alist "SimpleList"))

(test-equal "listify: strip off parentheses"
  '("R" "BH" "GenomicRanges")
  ((@@ (guix import cran) listify) simple-alist "List"))

(test-equal "listify: ignore values that are no lists"
  '()
  ((@@ (guix import cran) listify) simple-alist "BadList"))

(test-equal "r-mininal is not a cran package"
  #f
  ((@@ (guix import cran) cran-package?) r-minimal))

(test-assert "description->package"
  ;; Replace network resources with sample data.
  (mock ((guix build download) url-fetch
         (lambda* (url file-name
                       #:key
                       (mirrors '()) verify-certificate?)
           (with-output-to-file file-name
             (lambda ()
               (display
                (match url
                  ("mirror://cran/src/contrib/My-Example_1.2.3.tar.gz"
                   "source")
                  (_ (error "Unexpected URL: " url))))))))
    (match (description->package 'cran description-alist)
      (('package
         ('name "r-my-example")
         ('version "1.2.3")
         ('source ('origin
                    ('method 'url-fetch)
                    ('uri ('cran-uri "My-Example" 'version))
                    ('sha256
                     ('base32
                      (? string? hash)))))
         ('properties ('quasiquote (('upstream-name . "My-Example"))))
         ('build-system 'r-build-system)
         ('inputs ('list 'cairo))
         ('propagated-inputs
          ('list 'r-bh 'r-proto 'r-rcpp 'r-scales))
         ('home-page "http://gnu.org/s/my-example")
         ('synopsis "Example package")
         ('description
          "\
This is a long description spanning multiple lines: and it could confuse the
parser that this line is very long or perhaps the fact that there is a colon :
on the lines.  And: this line continues the description.")
         ('license 'gpl3+))
       #t)
      (x
       (begin
         (format #t "~s\n" x)
         (pk 'fail x #f))))))

(test-end "cran")
Tobias Geerinckx-Rice 2021-10-03bash completion: Complete ‘guix size’ file names....* etc/completion/bash/guix (_guix_complete): Complete store file names after the ‘size’ command. Tobias Geerinckx-Rice 2021-10-03bash completion: Complete ‘guix build’ file names....* etc/completion/bash/guix (_guix_complete_available_package_or_store_file): New function. (_guix_complete): Call it in place of _guix_complete_available_package after the ‘build’ command. Tobias Geerinckx-Rice 2021-10-03bash completion: Complete ‘guix weather’ packages....* etc/completion/bash/guix (_guix_complete): Complete available package names for ‘guix weather’ when not following ‘-m’. Tobias Geerinckx-Rice 2021-10-03bash completion: Append to $COMPREPLY where possible...._guix_complete is always called with a fresh empty array. * etc/completion/bash/guix (_guix_complete_command) (_guix_complete_subcommand, _guix_complete_installed_package) (_guix_complete_option, _guix_complete_pid): Append to $COMPREPLY rather than re-assigning. Tobias Geerinckx-Rice 2021-10-03bash completion: Consolidate similar $command ‘if’ branches....* etc/completion/bash/guix (_guix_complete): Combine the ‘upgrade’ and ‘remove’ commands, as well as ‘download’, ‘gc’, and ‘hash’. Tobias Geerinckx-Rice 2021-08-28zsh completion: Add missing commands and arguments....* etc/completion/zsh/_guix (_guix_install, _guix_remove, _guix_upgrade): New functions. (_guix_build, _guix_challenge, _guix_download, _guix_environment, _guix_packages, _guix_gc, _guix_hash, _guix_lint, _guix_package, _guix_publish, _guix_pull, _guix_refresh, _guix_size, _guix_system): Add some of the missing arguments. (_guix_cmds): Add missing commands. Co-authored-by: Brice Waegeneire <brice@waegenei.re> Noah Evans 2021-06-16bash_completion: Complete options for ‘guix environment’....Note that there are still plenty of bugs that this series didn't fix, e.g.: $ guix time-machine -- system reconf<Tab> * etc/completion/bash/guix (_guix_complete): Call _guix_complete_option if the word at point looks like an option. Tobias Geerinckx-Rice 2021-06-16bash completion: Complete options for the right command....* etc/completion/bash/guix (_guix_complete_option): Receive two arguments and complete the second based on the first, instead of blindly completing the very last word based on the very first (sub)command. (_guix_complete): Adjust both calls. Tobias Geerinckx-Rice 2021-06-16bash completion: Really support subcommands....* etc/completion/bash/guix (_guix_is_option): New function. (_guix_is_command): Remove function to replace it with simple string comparison… (_guix_complete): …here. Complete the ‘innermost’ command at point. Tobias Geerinckx-Rice 2021-04-20import: Remove Nix importer....This importer has suffered from bitrot and no longer works with current Nix and Nixpkgs. See <https://bugs.gnu.org/32339> and <https://bugs.gnu.org/36255>. * guix/import/snix.scm, guix/scripts/import/nix.scm, tests/snix.scm: Remove. * Makefile.am (MODULES, SCM_TESTS): Remove them. * guix/scripts/import.scm (importers): Remove "nix". * build-aux/test-env.in: Remove NIXPKGS variable. * configure.ac: Remove '--with-nixpkgs' option. * doc/guix.texi (Invoking guix import): Remove bit about "guix import nix". * etc/completion/fish/guix.fish: Likewise. Ludovic Courtès 2021-02-17scripts: system: Remove 'vm-image' command....Remove the 'vm-image' command that has been superseded by the 'image' command. * gnu/system/vm.scm (system-qemu-image): Remove it. * guix/scripts/system.scm (system-derivation-for-action): Mark 'vm-image' command as deprecated and use the image API to produce the VM image. (perform-action, show-help): Adapt accordingly. * tests/guix-system.sh: Ditto. * doc/guix.texi (Invoking guix system, Running Guix in a VM): Ditto. * etc/completion/fish/guix.fish: Ditto. * etc/completion/zsh/_guix: Ditto. Mathieu Othacehe 2020-12-04bash completion: Complete file names after '-f' and '-l'....* etc/completion/bash/guix (_guix_is_dash_f, _guix_is_dash_l): New functions. (_guix_complete): Complete file names after 'guix package -f', 'guix build -f', and 'guix environment -l'. Ludovic Courtès 2020-09-24bash completion: Adjust to new 'guix help' output....This is a followup to 3794ce93be8216d8378df7b808ce7f53b1e05a53, which broke command completion. Reported by Oleg Pykhalov <go.wigust@gmail.com>. * etc/completion/bash/guix (_guix_complete_command): Update to match output of 'guix help' as introduced in 3794ce93be8216d8378df7b808ce7f53b1e05a53. Ludovic Courtès 2020-09-21bash completion: Complete file names after 'guix package -p'....* etc/completion/bash/guix (_guix_complete): Add _guix_is_dash_p. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Fulbert 2020-09-10bash completion: Restore completion for 'guix system', etc....Commit 538ca8dd65f0075cc65bcca18ed87f66a789290a introduced a second '_guix_complete_subcommand' function, shadowing the existing one, which broke sub-command completion for 'guix system', 'guix import', etc. * etc/completion/bash/guix: Distinguish between '_guix_complete_command' and '_guix_complete_subcommand'. Adjust users to call the right one. Ludovic Courtès 2020-06-27bash completion: Complete 'guix environment' properly....* etc/completion/bash/guix (_guix_complete): Add case for "guix environment". Ludovic Courtès 2020-06-04bash completion: Complete sub-commands after 'guix time-machine'....* etc/completion/bash/guix (_guix_complete_subcommand): New function. (_guix_complete): Use it. For "time-machine", call '_guix_complete_subcommand' by default. Ludovic Courtès 2020-06-04bash completion: Complete file names after '-p' and '-C'....* etc/completion/bash/guix (_guix_is_dash_C, _guix_is_dash_p): New functions. (_guix_complete): Honor them for "install", "remove", "upgrade", "pull", and "time-machine". Ludovic Courtès 2020-05-13mailmap: Update entries for Nikita....* .mailmap: change email and name for Nikita. * Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish, gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/erlang.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile-xyz.scm, gnu/packages/haskell-apps.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell-xyz.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp-xyz.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python-xyz.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> nikita 2020-02-14guix build: Add '--manifest' option....* guix/scripts/build.scm (show-help): Document --manifest argument. (options->things-to-build): When given a manifest, evaluate all the entries. * tests/guix-build.sh: Add test for --manifest. * doc/guix.texi (Additional Build Options): Mention --manifest. * etc/completion/bash/guix: Complete file name if 'guix build' argument is -m. Marius Bakke 2019-11-26guix build, daemon: Rename "--no-build-hook" to "--no-offload"....This is a followup to bc69ea2d605810cc32e13ed03d5848b8dc358b61. * guix/scripts/build.scm (show-build-options-help): Rename "--no-build-hook" to "--no-offload". (%standard-build-options): Likewise, and warn when "--no-build-hook" is passed. * nix/nix-daemon/guix-daemon.cc (options): Add "--no-offload" and mark "--no-build-hook" as hidden. * guix/scripts/offload.scm: Adjust comment. * doc/guix.texi (Invoking guix-daemon, Common Build Options): Replace "--no-build-hook" with "--no-offload". * etc/completion/fish/guix.fish, etc/completion/zsh/_guix: Adjust accordingly. Ludovic Courtès 2019-04-29guix package: Add 'install', 'remove', and 'upgrade' aliases....* guix/scripts/install.scm, guix/scripts/remove.scm, guix/scripts/upgrade.scm, tests/guix-package-aliases.sh: New files. * Makefile.am (MODULES, SH_TESTS): Add them. * po/guix/POTFILES.in: Add them. * guix/scripts/package.scm (guix-package): Split with... (guix-package*): ... this. New procedure. * doc/guix.texi (Invoking guix package): Document them. (Binary Installation, Application Setup, Package Management) (Packages with Multiple Outputs, Package Modules) (X.509 Certificates, Installing Debugging Files): Use 'guix install' in simple examples. * etc/completion/bash/guix (_guix_complete): Handle "install", "remove", and "upgrade". Ludovic Courtès 2019-03-18Correct name and email address for ng0....* .mailmap, Makefile.am, doc/guix.de.texi, doc/guix.fr.texi, doc/guix.texi, etc/completion/fish/guix.fish, gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/erlang.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,gnu/packages/guile-xyz.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python-xyz.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Correct name and email address for ng0. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> ng0 2018-11-06bash completion: Restore completion of available packages for 'guix build'....Fixes a regression introduced in 9b0a755f642542dd96065ad05ec9d844d8077fd7 whereby 'guix build TAB' would not suggest any completion. * etc/completion/bash/guix (_guix_complete): Arrange so 'guix build TAB' completes available packages. Ludovic Courtès 2018-07-03bash completion: Complete files names after 'guix weather -m'....* etc/completion/bash/guix (_guix_complete): Complete files names after 'guix weather -m'. Oleg Pykhalov 2018-07-03bash completion: Complete files names after 'guix build -L'....* etc/completion/bash/guix (_guix_complete): Complete files names after 'guix build -L'. Oleg Pykhalov 2018-06-16Add guix-daemon Bash completion file....* etc/completion/bash/guix-daemon: New file. * Makefile.am (dist_bashcompletion_DATA): Add this. Oleg Pykhalov 2018-03-20Correct name and Email for ng0....* .mailmap: Correct name and Email for ng0. * Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> ng0 2018-02-17bash completion: Complete files names after 'guix package -m'....* etc/completion/bash/guix (_guix_is_dash_m): New function. (_guix_complete): Add this. Oleg Pykhalov 2018-01-16etc: Add completions for fish....* etc/completion/fish/guix.fish: New file. * Makefile.am: Register the file. * configure.ac: Add the fish vendor-completions directory. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng0