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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (test-cran)
  #:use-module (gnu packages statistics)
  #:use-module (guix import cran)
  #:use-module (guix tests)
  #:use-module (srfi srfi-1)
  #:use-module (srfi srfi-64)
  #:use-module (srfi srfi-26)
  #:use-module (ice-9 match))

(define description "
Package: My-Example
Type: Package
Title: Example package
Version: 1.2.3
Date: 2015-12-10
Author: Ricardo Wurmus
Maintainer: Guix Schmeeks <guix@gnu.org>
URL: http://gnu.org/s/my-example
Description: This is a long description
spanning multiple lines: and it could confuse the parser that this line is very long or perhaps the fact that
there is a colon : on the lines.
  And: this line continues the description.
biocViews: 0
SystemRequirements: Cairo (>= 0)
Depends: A C++11 compiler. Version 4.6.* of g++ (as
	currently in Rtools) is insufficient; versions 4.8.*, 4.9.* or
	later will be fine.
License: GPL (>= 3)
Imports: Rcpp (>= 0.11.5), proto, Scales
LinkingTo: Rcpp, BH
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-07-14 14:15:16
")

(define description-alist
  (description->alist description))

(define simple-alist
  '(("Key"        . "Value")
    ("SimpleList" . "R, Rcpp, something, whatever")
    ("BadList"    . "This is not a real list, you know?")
    ("List"       . "R (>= 2.2), BH (for no reason), GenomicRanges")))

(test-begin "cran")

(test-assert "description->alist: contains all valid keys"
  (let ((keys '("Package" "Type" "Title" "Version" "Date"
                "Author" "Maintainer" "URL" "Description"
                "SystemRequirements" "Depends" "License"
                "Imports" "biocViews" "LinkingTo"
                "NeedsCompilation" "Repository"
                "Date/Publication")))
    (lset= string=? keys (map car description-alist))))

(test-equal "listifyx: return empty list if key cannot be found"
  '()
  ((@@ (guix import cran) listify) simple-alist "Letters"))

(test-equal "listify: split comma-separated value into elements"
  '("R" "Rcpp" "something" "whatever")
  ((@@ (guix import cran) listify) simple-alist "SimpleList"))

(test-equal "listify: strip off parentheses"
  '("R" "BH" "GenomicRanges")
  ((@@ (guix import cran) listify) simple-alist "List"))

(test-equal "listify: ignore values that are no lists"
  '()
  ((@@ (guix import cran) listify) simple-alist "BadList"))

(test-equal "r-mininal is not a cran package"
  #f
  ((@@ (guix import cran) cran-package?) r-minimal))

(test-assert "description->package"
  ;; Replace network resources with sample data.
  (mock ((guix build download) url-fetch
         (lambda* (url file-name
                       #:key
                       (mirrors '()) verify-certificate?)
           (with-output-to-file file-name
             (lambda ()
               (display
                (match url
                  ("mirror://cran/src/contrib/My-Example_1.2.3.tar.gz"
                   "source")
                  (_ (error "Unexpected URL: " url))))))))
    (match (description->package 'cran description-alist)
      (('package
         ('name "r-my-example")
         ('version "1.2.3")
         ('source ('origin
                    ('method 'url-fetch)
                    ('uri ('cran-uri "My-Example" 'version))
                    ('sha256
                     ('base32
                      (? string? hash)))))
         ('properties ('quasiquote (('upstream-name . "My-Example"))))
         ('build-system 'r-build-system)
         ('inputs ('list 'cairo))
         ('propagated-inputs
          ('list 'r-bh 'r-proto 'r-rcpp 'r-scales))
         ('home-page "http://gnu.org/s/my-example")
         ('synopsis "Example package")
         ('description
          "\
This is a long description spanning multiple lines: and it could confuse the
parser that this line is very long or perhaps the fact that there is a colon :
on the lines.  And: this line continues the description.")
         ('license 'gpl3+))
       #t)
      (x
       (begin
         (format #t "~s\n" x)
         (pk 'fail x #f))))))

(test-end "cran")
:25:01 +0100'>2020-12-19maint: Require Guile >= 2.2.6....* configure.ac: For Guile 2.2, require 2.2.6 or later. * guix/gexp.scm (define-syntax-parameter-once): Remove. Use 'define-syntax-parameter' instead. * guix/mnoads.scm: Likewise. * guix/inferior.scm (proxy)[select*]: Remove. * guix/scripts/publish.scm <top level>: Remove replacement for (@@ (web http) read-header-line). * guix/store/deduplication.scm (counting-wrapper-port): Remove. (nar-sha256): Call 'port-position' on PORT to compute SIZE. Ludovic Courtès 2020-12-11maint: Avoid macros obsolete in Autoconf 2.70....* configure.ac: Require Autoconf 2.69. Use 'AS_HELP_STRING' instead of 'AC_HELP_STRING'. * m4/guix.m4: Likewise. * config-daemon.ac: Use 'AC_CONFIG_HEADERS' instead of the singular variant. Ludovic Courtès 2020-11-29Make "guile-avahi" dependency optional....* configure.ac (HAVE_GUILE_AVAHI): New conditional. * Makefile.am (MODULES): Add "guix/avahi.scm" and "guix/scripts/discover.scm" if HAVE_GUILE_AVAHI is set. * guix/scripts/publish.scm: Autoload (guix avahi). * guix/scripts/substitute.scm: Autoload (guix scripts discovery). Mathieu Othacehe 2020-11-29Add Avahi support....* guix/avahi.scm: New file. * Makefile.am (MODULES): Add it. * configure.ac: Add Guile-Avahi dependency. * doc/guix.texi (Requirements): Document it. * gnu/packages/package-management.scm (guix)[native-inputs]: Add "guile-avahi", [propagated-inputs]: ditto. * guix/self.scm (specification->package): Add guile-avahi. (compiled-guix): Ditto. Mathieu Othacehe 2020-10-22git: Require Guile-Git 0.3.0 or later....* guix/git.scm (auth-supported?): Remove. (clone*): Inline code that was dependent on AUTH-SUPPORTED?. (update-cached-checkout): Likewise. (resolve-reference): Remove check for 'object-lookup-prefix' and use it unconditionally. (load-git-submodules): Remove. (update-submodules): Use 'repository-submodules', 'submodule-lookup', etc. unconditionally. (update-cached-checkout): Use 'repository-close!' unconditionally. * m4/guix.m4 (GUIX_CHECK_GUILE_GIT): New macro. * configure.ac: Use it and error out when it fails. * doc/guix.texi (Requirements): Bump to Guile-Git 0.3.0. Ludovic Courtès 2020-10-05build: Use a 'guile' executable that doesn't warn about locales....This gets rid of: guile: warning: failed to install locale when running the 'guix' command on a foreign distro where 'GUIX_LOCPATH' isn't set. * Makefile.am (pkglibexec_PROGRAMS, guile_SOURCES, guile_LDADD) (guile_CFLAGS): New variables. (install-exec-hook): New target. (AUX_FILES): Remove 'guile-launcher.c'. * configure.ac: Use 'GUILE_FLAGS'. Ludovic Courtès 2020-08-29build: Remove references to the 'nix-hash' program....* configure.ac: Remove check for 'nix-hash'. * tests/base32.scm (%nix-hash, %have-nix-hash?): Remove. ("sha256 & bytevector->nix-base32-string"): Remove test. * build-aux/pre-inst-env.in: Do not set 'NIX_HASH' environment variable. Ludovic Courtès 2020-08-29build: Remove check for Guile 2.2.1 bug....This check is unnecessary since e688c2df3924423b67892cc9939ca099c729d1cb. * m4/guix.m4 (GUIX_ASSERT_SYNTAX_OBJECT_EQUAL): Remove. * configure.ac: Remove user. Ludovic Courtès 2020-08-24Use "guile-zlib" and "guile-lzlib" instead of (guix config)....* Makefile.am (MODULES): Remove guix/zlib.scm and guix/lzlib.scm, (SCM_TESTS): remove tests/zlib.scm, tests/lzlib.scm. * build-aux/build-self.scm (make-config.scm): Remove unused %libz variable. * configure.ac: Remove LIBZ and LIBLZ variables and check instead for Guile-zlib and Guile-lzlib. * doc/guix.texi ("Requirements"): Remove zlib requirement and add Guile-zlib and Guile-lzlib instead. * gnu/packages/package-management.scm (guix)[native-inputs]: Add "guile-zlib" and "guile-lzlib", [inputs]: remove "zlib" and "lzlib", [propagated-inputs]: ditto, [arguments]: add "guile-zlib" and "guile-lzlib" to Guile load path. * guix/config.scm.in (%libz, %liblz): Remove them. * guix/lzlib.scm: Remove it. * guix/man-db.scm: Use (zlib) instead of (guix zlib). * guix/profiles.scm (manual-database): Do not stub (guix config) in imported modules list, instead add "guile-zlib" to the extension list. * guix/scripts/publish.scm: Use (zlib) instead of (guix zlib) and (lzlib) instead of (guix lzlib), (string->compression-type, effective-compression): do not check for zlib and lzlib availability. * guix/scripts/substitute.scm (%compression-methods): Do not check for lzlib availability. * guix/self.scm (specification->package): Add "guile-zlib" and "guile-lzlib" and remove "zlib" and "lzlib", (compiled-guix): remove "zlib" and "lzlib" arguments and add guile-zlib and guile-lzlib to the dependencies, also do not pass "zlib" and "lzlib" to "make-config.scm" procedure, (make-config.scm): remove "zlib" and "lzlib" arguments as well as %libz and %liblz variables. * guix/utils.scm (lzip-port): Use (lzlib) instead of (guix lzlib) and do not check for lzlib availability. * guix/zlib.scm: Remove it. * m4/guix.m4 (GUIX_LIBZ_LIBDIR, GUIX_LIBLZ_FILE_NAME): Remove them. * tests/lzlib.scm: Use (zlib) instead of (guix zlib) and (lzlib) instead of (guix lzlib), and do not check for zlib and lzlib availability. * tests/publish.scm: Ditto. * tests/substitute.scm: Do not check for lzlib availability. * tests/utils.scm: Ditto. * tests/zlib.scm: Remove it. Mathieu Othacehe 2020-06-16etc: Add committer script....* etc/committer.scm.in: New file. * configure.ac: Configure it. Ricardo Wurmus 2020-05-28maint: Check whether Guile-Gcrypt is recent enough....Suggested by Danny Milosavljevic <dannym@scratchpost.org> in <https://bugs.gnu.org/41494>. * m4/guix.m4 (GUIX_CHECK_GUILE_GCRYPT): New macro. * configure.ac: Use it. Ludovic Courtès 2020-05-14etc: indent-code.el: Use the --quick option....This prevents Emacs from loading the autoload definitions found in its profile, which needlessly clutters the output. It also prevents Geiser (if installed) from blocking the script and asking the user to input the Scheme implementation to use. The trick for passing multiple arguments to Emacs is to use what is called a "sesquicolon" (see https://www.emacswiki.org/emacs/EmacsScripts). * etc/indent-code.el.in: Rename to... * etc/indent-code.el: ...this. Adapt the shebang to use a sesquicolon, and pass the --quick option to Emacs. Since this line is interpreted by the shell, simply use Emacs from the PATH instead of from a hard coded location. (main): New procedure, used as the entry point. * configure.ac: Remove the warning about Emacs. Emacs can now be installed any time by the user if they want to use the script. * .gitignore: No longer ignore changes to etc/indent-code.el. Maxim Cournoyer 2020-04-23build: Don't build man pages when cross-compiling....* configure.ac: Define 'CROSS_COMPILING' Automake conditional. * doc/local.mk (dist_man1_MANS): Wrap in "if !CROSS_COMPILING". Ludovic Courtès