aboutsummaryrefslogtreecommitdiff
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (test-cran)
  #:use-module (gnu packages statistics)
  #:use-module (guix import cran)
  #:use-module (guix tests)
  #:use-module (srfi srfi-1)
  #:use-module (srfi srfi-64)
  #:use-module (srfi srfi-26)
  #:use-module (ice-9 match))

(define description "
Package: My-Example
Type: Package
Title: Example package
Version: 1.2.3
Date: 2015-12-10
Author: Ricardo Wurmus
Maintainer: Guix Schmeeks <guix@gnu.org>
URL: http://gnu.org/s/my-example
Description: This is a long description
spanning multiple lines: and it could confuse the parser that this line is very long or perhaps the fact that
there is a colon : on the lines.
  And: this line continues the description.
biocViews: 0
SystemRequirements: Cairo (>= 0)
Depends: A C++11 compiler. Version 4.6.* of g++ (as
	currently in Rtools) is insufficient; versions 4.8.*, 4.9.* or
	later will be fine.
License: GPL (>= 3)
Imports: Rcpp (>= 0.11.5), proto, Scales
LinkingTo: Rcpp, BH
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-07-14 14:15:16
")

(define description-alist
  (description->alist description))

(define simple-alist
  '(("Key"        . "Value")
    ("SimpleList" . "R, Rcpp, something, whatever")
    ("BadList"    . "This is not a real list, you know?")
    ("List"       . "R (>= 2.2), BH (for no reason), GenomicRanges")))

(test-begin "cran")

(test-assert "description->alist: contains all valid keys"
  (let ((keys '("Package" "Type" "Title" "Version" "Date"
                "Author" "Maintainer" "URL" "Description"
                "SystemRequirements" "Depends" "License"
                "Imports" "biocViews" "LinkingTo"
                "NeedsCompilation" "Repository"
                "Date/Publication")))
    (lset= string=? keys (map car description-alist))))

(test-equal "listifyx: return empty list if key cannot be found"
  '()
  ((@@ (guix import cran) listify) simple-alist "Letters"))

(test-equal "listify: split comma-separated value into elements"
  '("R" "Rcpp" "something" "whatever")
  ((@@ (guix import cran) listify) simple-alist "SimpleList"))

(test-equal "listify: strip off parentheses"
  '("R" "BH" "GenomicRanges")
  ((@@ (guix import cran) listify) simple-alist "List"))

(test-equal "listify: ignore values that are no lists"
  '()
  ((@@ (guix import cran) listify) simple-alist "BadList"))

(test-equal "r-mininal is not a cran package"
  #f
  ((@@ (guix import cran) cran-package?) r-minimal))

(test-assert "description->package"
  ;; Replace network resources with sample data.
  (mock ((guix build download) url-fetch
         (lambda* (url file-name
                       #:key
                       (mirrors '()) verify-certificate?)
           (with-output-to-file file-name
             (lambda ()
               (display
                (match url
                  ("mirror://cran/src/contrib/My-Example_1.2.3.tar.gz"
                   "source")
                  (_ (error "Unexpected URL: " url))))))))
    (match (description->package 'cran description-alist)
      (('package
         ('name "r-my-example")
         ('version "1.2.3")
         ('source ('origin
                    ('method 'url-fetch)
                    ('uri ('cran-uri "My-Example" 'version))
                    ('sha256
                     ('base32
                      (? string? hash)))))
         ('properties ('quasiquote (('upstream-name . "My-Example"))))
         ('build-system 'r-build-system)
         ('inputs ('list 'cairo))
         ('propagated-inputs
          ('list 'r-bh 'r-proto 'r-rcpp 'r-scales))
         ('home-page "http://gnu.org/s/my-example")
         ('synopsis "Example package")
         ('description
          "\
This is a long description spanning multiple lines: and it could confuse the
parser that this line is very long or perhaps the fact that there is a colon :
on the lines.  And: this line continues the description.")
         ('license 'gpl3+))
       #t)
      (x
       (begin
         (format #t "~s\n" x)
         (pk 'fail x #f))))))

(test-end "cran")
='2020-07-17 15:23:53 +0200'>2020-07-17gitignore: Don't ignore daemon source code....Remove files that are included in the repository from .gitignore. This improves the behavior of some code-searching tools. Jakub Kądziołka 2020-06-28.gitignore: Ignore 'etc/committer.scm'....* .gitignore: Add '/etc/committer.scm'. Brice Waegeneire 2020-05-16etc: Add a systemd unit to bind-mount @storedir@ read-only....* etc/gnu-store.mount.in: New file. * nix/local.mk (nodist_systemdservice_DATA): Add it. (etc/%.mount): New rule for it. * etc/guix-install.sh (sys_enable_guix_daemon): Install it. * doc/guix.texi (Binary Installation): Document it. * .gitignore: Ignore changes to it. Tobias Geerinckx-Rice 2020-05-14etc: indent-code.el: Use the --quick option....This prevents Emacs from loading the autoload definitions found in its profile, which needlessly clutters the output. It also prevents Geiser (if installed) from blocking the script and asking the user to input the Scheme implementation to use. The trick for passing multiple arguments to Emacs is to use what is called a "sesquicolon" (see https://www.emacswiki.org/emacs/EmacsScripts). * etc/indent-code.el.in: Rename to... * etc/indent-code.el: ...this. Adapt the shebang to use a sesquicolon, and pass the --quick option to Emacs. Since this line is interpreted by the shell, simply use Emacs from the PATH instead of from a hard coded location. (main): New procedure, used as the entry point. * configure.ac: Remove the warning about Emacs. Emacs can now be installed any time by the user if they want to use the script. * .gitignore: No longer ignore changes to etc/indent-code.el. Maxim Cournoyer 2020-03-30.gitignore: Ignore test results in tests/services....This is a follow-up to commit d3e439e355284f136ff13eb3e6fffb4661552f3b. * .gitignore: Add /tests/services/*.trs. Marius Bakke 2020-03-11Add system start-up files for guix-daemon....* etc/init.d/guix-daemon.in: New file. * nix/local.mk (etc/init.d/guix-daemon): New rule. (nodist_sysvinitservice_DATA): Add etc/init.d/guix-daemon.in . (CLEANFILES): Add etc/init.d/guix-daemon . * .gitignore: Add etc/init.d/guix-daemon . Danny Milosavljevic